View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386_low_37 (Length: 324)
Name: NF11386_low_37
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_37 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 34552197 - 34552496
Alignment:
| Q |
16 |
aattttagtcattacttaacttcatacaaaacaatctaatccatcaataacataaaaagtacgcacatttcgtttggaaaatctaatatgatagaaaatg |
115 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
34552197 |
aattatagtcattacttaacttcataccaaacaatctaatcca-caataacataaaaagtacgcacatttcgtttgggagatctaatatgatagaaaatg |
34552295 |
T |
|
| Q |
116 |
aagtaacctaaatacacatcgcataaggtaatgtagcaatgatacttaaagtagaa----taaataaaagtacccatgtgagtttcttccagctcaacac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34552296 |
aagtaacctaaatacacatcgcataaggtaatgtagcaatgatacttaaagtagaagacatatataaaagtacccatgtgagtttcttccagctcaacac |
34552395 |
T |
|
| Q |
212 |
tcaatcattaaaccacattgatattttcttaacgaattaaagcttgctaagtgaattgctcaatcctgaaaattcccaaagtttatgacttgctcgctct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34552396 |
tcaatcattaaaccacattgatattttcttaacgaattaaagcttgctaagtgaattgctcaatcctgaaaatttccaaagtttatgacttgctcgctct |
34552495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University