View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386_low_4 (Length: 685)

Name: NF11386_low_4
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386_low_4
NF11386_low_4
[»] chr4 (3 HSPs)
chr4 (317-679)||(46477137-46477499)
chr4 (292-338)||(43117921-43117967)
chr4 (291-340)||(2401069-2401118)
[»] chr7 (2 HSPs)
chr7 (18-230)||(20560330-20560542)
chr7 (222-341)||(20559626-20559745)
[»] chr2 (3 HSPs)
chr2 (292-336)||(37109024-37109068)
chr2 (308-340)||(40439080-40439112)
chr2 (292-340)||(41153178-41153226)
[»] scaffold0777 (1 HSPs)
scaffold0777 (299-340)||(4741-4782)
[»] chr6 (2 HSPs)
chr6 (295-340)||(7257400-7257445)
chr6 (292-340)||(1158312-1158360)
[»] chr3 (3 HSPs)
chr3 (296-337)||(54273431-54273472)
chr3 (294-330)||(8036575-8036611)
chr3 (293-337)||(29290846-29290890)
[»] chr1 (3 HSPs)
chr1 (292-341)||(21945086-21945135)
chr1 (295-340)||(35790357-35790402)
chr1 (292-340)||(50155365-50155413)


Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 317 - 679
Target Start/End: Complemental strand, 46477499 - 46477137
Alignment:
Q  317 agttattcaatgaatttaaaaagtggtaccgtgaagaagtgcagataagcttccggcgggcatgtaatcataaacaagcaatttttcatctttagagtag 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  46477499 agttattcaatgaatttaaaaagtggtaccgtgaagaagtgcagataagcttccggcggccatgtaatcataaacaagcaatttttcatctttagagtag 46477400  T
Q  417 taaaaagctcttaatggaaccacattatcatgcttaatctttcccaaaatctccatttgcatctcaaactcttttttagtaacaacaacatctttcaacc 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46477399 taaaaagctcttaatggaaccacattatcatgcttaatctttcccaaaatctccatttgcatctcaaactcttttttagtaacaacaacatctttcaacc 46477300  T
Q  517 ttttaacaaccaccgttgttccttcttccaacaccgctttatacgaagttccaacacttccctttcctaatacctccgcagaagctctaagcaaatcctc 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46477299 ttttaacaaccaccgttgttccttcttccaacaccgctttatacgaagttccaacacttccctttcctaatacctccgcagaagctctaagcaaatcctc 46477200  T
Q  617 caaatcaaaactgtatattccaccgtcgaaaaacaccagtttgttcctctccctctctgcttc 679  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46477199 caaatcaaaactgtatattccaccgtcgaaaaacaccagtttgttcctctccctctctgcttc 46477137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 292 - 338
Target Start/End: Original strand, 43117921 - 43117967
Alignment:
Q  292 gtctatattatatacgaaatacatcagttattcaatgaatttaaaaa 338  Q
    ||||||||| ||||| |||||||||| ||||||||||||| ||||||    
T  43117921 gtctatattttataccaaatacatcaattattcaatgaatgtaaaaa 43117967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 2401118 - 2401069
Alignment:
Q  291 agtctatattatatacgaaatacatcagttattcaatgaatttaaaaagt 340  Q
    ||||||||||||  || |||||||||| ||||| ||||||||||||||||    
T  2401118 agtctatattattgaccaaatacatcatttattgaatgaatttaaaaagt 2401069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 20560542 - 20560330
Alignment:
Q  18 tttctttcacgtgcttgttgggccgagaccctattccttagcaacctatttgtaatataagtcatttattagtttcagatagtataatctgaagttcggc 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||    
T  20560542 tttctttcacgggcttgttgggccgagaccctattccttagcaacctatttgtaatataagtcatttattagtttcaaatagtatagtctgcagttcggc 20560443  T
Q  118 cgatagatatgtaaaattggactaaaattgttctaattaagtattatgaataattcgtctttaaccgtttgagttcaataacttaattactcttgaataa 217  Q
     || ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||    
T  20560442 tgaaagatatgtaaaattggactaaaattgttctaattaagtattatgaatgattcttcttgaaccgtttgagttcaataacttaattactcttgaataa 20560343  T
Q  218 tattttaattgca 230  Q
     ||||||||||||    
T  20560342 cattttaattgca 20560330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 222 - 341
Target Start/End: Complemental strand, 20559745 - 20559626
Alignment:
Q  222 ttaattgcaatatgtatccaaatcttcttagtgacaagtttgataatttaacgtagaaattaatacaaaagtctatattatatacgaaatacatcagtta 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||    
T  20559745 ttaattgcaatatgtatccaaatcttcttagtgacaagtttgataatttaatgtagaaattaattcaaaagtctatattatatacaaaatacatcagtta 20559646  T
Q  322 ttcaatgaatttaaaaagtg 341  Q
    ||||||||||||||||||||    
T  20559645 ttcaatgaatttaaaaagtg 20559626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 37109024 - 37109068
Alignment:
Q  292 gtctatattatatacgaaatacatcagttattcaatgaatttaaa 336  Q
    |||||||||||| || ||||||||||||| |||||||||||||||    
T  37109024 gtctatattatagactaaatacatcagttcttcaatgaatttaaa 37109068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 308 - 340
Target Start/End: Complemental strand, 40439112 - 40439080
Alignment:
Q  308 aaatacatcagttattcaatgaatttaaaaagt 340  Q
    |||||||||| ||||||||||||||||||||||    
T  40439112 aaatacatcaattattcaatgaatttaaaaagt 40439080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 41153178 - 41153226
Alignment:
Q  292 gtctatattatatacgaaatacatcagttattcaatgaatttaaaaagt 340  Q
    |||||||||||| || |||||||||| ||| ||||||||| ||||||||    
T  41153178 gtctatattataaaccaaatacatcaattactcaatgaatctaaaaagt 41153226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 4782 - 4741
Alignment:
Q  299 ttatatacgaaatacatcagttattcaatgaatttaaaaagt 340  Q
    |||||||  |||||||| ||||||||||||||||||||||||    
T  4782 ttatatatcaaatacattagttattcaatgaatttaaaaagt 4741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 7257400 - 7257445
Alignment:
Q  295 tatattatatacgaaatacatcagttattcaatgaatttaaaaagt 340  Q
    |||||||||||  |||||||| | ||||||||||||||||||||||    
T  7257400 tatattatatatcaaatacattaattattcaatgaatttaaaaagt 7257445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 1158312 - 1158360
Alignment:
Q  292 gtctatattatatacgaaatacatcagttattcaatgaatttaaaaagt 340  Q
    ||||||||| || || |||||||||| |||||||||| |||||||||||    
T  1158312 gtctatattctagaccaaatacatcaattattcaatgtatttaaaaagt 1158360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 54273472 - 54273431
Alignment:
Q  296 atattatatacgaaatacatcagttattcaatgaatttaaaa 337  Q
    ||||||||||| |||||||||| |||||||||||| ||||||    
T  54273472 atattatataccaaatacatcatttattcaatgaacttaaaa 54273431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 8036611 - 8036575
Alignment:
Q  294 ctatattatatacgaaatacatcagttattcaatgaa 330  Q
    |||||||||| || |||||||||||||||||||||||    
T  8036611 ctatattataaactaaatacatcagttattcaatgaa 8036575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 29290846 - 29290890
Alignment:
Q  293 tctatattatatacgaaatacatcagttattcaatgaatttaaaa 337  Q
    ||||||||||| || |||||||| |||||||||||||||| ||||    
T  29290846 tctatattatagactaaatacataagttattcaatgaattaaaaa 29290890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 21945135 - 21945086
Alignment:
Q  292 gtctatattatatacgaaatacatcagttattcaatgaatttaaaaagtg 341  Q
    ||||||| ||||||| |||||||| || |||||||||||| |||||||||    
T  21945135 gtctataatatataccaaatacattaggtattcaatgaatctaaaaagtg 21945086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 35790402 - 35790357
Alignment:
Q  295 tatattatatacgaaatacatcagttattcaatgaatttaaaaagt 340  Q
    ||||| |||||  |||||||||| ||||||||||||||||||||||    
T  35790402 tatatcatatatcaaatacatcaattattcaatgaatttaaaaagt 35790357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 50155365 - 50155413
Alignment:
Q  292 gtctatattatatacgaaatacatcagttattcaatgaatttaaaaagt 340  Q
    |||||||||||| || |||||||||| ||| ||||||||| ||||||||    
T  50155365 gtctatattatagaccaaatacatcaattactcaatgaatctaaaaagt 50155413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University