View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_low_44 (Length: 289)
Name: NF11386_low_44
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-150; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 376793 - 376522
Alignment:
| Q |
1 |
ctctccaacttgttttgaatgattttctcttgaaacaattcaaagcttctttgtttgaaaatagagtgaagaagagacctattatatttccatgtctttg |
100 |
Q |
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| T |
376793 |
ctctccaacttgttttgaatgattttctcttgaaacaattcaaagcttctttgtttaaaaatagagtgaagaagagacctattatatttccatgtctttg |
376694 |
T |
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| Q |
101 |
aatcagcgttgaatattccatctccaaaggcttcaaatatctcatgaaattcatgacccttcacataattgtcaaaacgcttgctcattatgtgatgcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
376693 |
aatcagcgttgaatattccatctccaaaggcttcaaatatctcatgaaattcatgacccttcacataattgtcaaaacgcttgctcattatgtgatgcac |
376594 |
T |
|
| Q |
201 |
attcatggggtcactagtgatgaaataattcattttggtaaaccaaggtcccatgaactcaccactacctct |
272 |
Q |
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| T |
376593 |
attcatggggtcactagtgatgaaataattcattttggtaaaccaaggtcccatgaactcaccactacctct |
376522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 347703 - 347964
Alignment:
| Q |
1 |
ctctccaacttgttttgaatgattttctcttgaaacaattcaaagcttctttgtttgaaaatagagtgaagaagagacctattatatttccatgtctttg |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| ||| | |
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| T |
347703 |
ctctccaacttgttttgaatgattttcttttgaaacaattcaaaatctctttgtttgaaaatagagtgaaaaagagacctattgtatttccatttctccg |
347802 |
T |
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| Q |
101 |
aatcagcgttgaatattccatctccaaaggcttcaaatatctcatgaaattcatgacccttcacataattgtcaaaacgcttgctcattatgtgatgcac |
200 |
Q |
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| T |
347803 |
aatcagcgttgaatattccatctccaaaggcttcaaaaatctcatgaaattcttgaccctttacataattatcaaaacacttgctcatcatgtgatgcac |
347902 |
T |
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| Q |
201 |
attcatggggtcactagtgatgaaataattcattttggtaaaccaaggtcccatgaactcac |
262 |
Q |
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| T |
347903 |
gttcatagggtcactagtaaccaaatagttcatgttggtaaaccaaggtcccatgaactcac |
347964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 2 - 262
Target Start/End: Original strand, 356363 - 356623
Alignment:
| Q |
2 |
tctccaacttgttttgaatgattttctcttgaaacaattcaaagcttctttgtttgaaaatagagtgaagaagagacctattatatttccatgtctttga |
101 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||| |||| ||| ||||||||||||| |||||||||||| ||||||||||||| || |
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| T |
356363 |
tctccaacttgttttgaatgattttcttttgaaacatttcaaaatctcttattttcaaaatagagtgaaaaagagacctattgtatttccatgtctccga |
356462 |
T |
|
| Q |
102 |
atcagcgttgaatattccatctccaaaggcttcaaatatctcatgaaattcatgacccttcacataattgtcaaaacgcttgctcattatgtgatgcaca |
201 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| | |||||||||| |
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| T |
356463 |
atcagtgttgaatattccatctccaaaggcttcaaatatctcatgatattcatgacccttaacataattgtcaaaagacttgcttaacatgtgatgcaag |
356562 |
T |
|
| Q |
202 |
ttcatggggtcactagtgatgaaataattcattttggtaaaccaaggtcccatgaactcac |
262 |
Q |
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|| |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| |
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| T |
356563 |
ttgatggggtcactagtgaccaaatagttcatgctggtaaaccaaggtcccatgaactcac |
356623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 337000 - 336917
Alignment:
| Q |
10 |
ttgttttgaatgattttctcttgaaacaattcaaagcttctttgtttgaaaatagagtgaagaagagacctattatatttccat |
93 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||| | | | || |||||| |||||| ||||||||| |
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| T |
337000 |
ttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgtttgaagagatattggagaagattcctattgtatttccat |
336917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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