View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_low_46 (Length: 273)
Name: NF11386_low_46
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 40768687 - 40768448
Alignment:
| Q |
18 |
aataaacttcccacccacatacaaatatgaatttaactctgataaacatgtgggtgggaacacacaagaaggtgaaaaaaggagagctccagcatggtaa |
117 |
Q |
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| T |
40768687 |
aataaacttcccacccacatacaaatatgaatttaactctgataaacatgtgggtgggaacacacaagaaggtgaaaaaaggagagctccagcatggtaa |
40768588 |
T |
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| Q |
118 |
gtgcaagcatgtgaattttttgttgttgcatgaattagacactataattatgcgtaagattatgcaggtgtgatcgcatattgtggcttggaaaaggaat |
217 |
Q |
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| T |
40768587 |
gtgcaagcatgtgaattttttgttgttgcatgaattagacactataattatgcgtaagattatgcaggtgtgatcgcatattgtggcttggaaaaggaat |
40768488 |
T |
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| Q |
218 |
aaagcaactaaagtatcagagtgcagaaaatcagctttca |
257 |
Q |
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| T |
40768487 |
aaagcaactaaagtatcagagtgcagaaaatcagctttca |
40768448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 40775318 - 40775080
Alignment:
| Q |
19 |
ataaacttcccacccacatacaaatatgaatttaactctgataaacatgtgggtgggaacacacaagaaggtgaaaaaaggagagctccagcatggtaag |
118 |
Q |
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| T |
40775318 |
ataaacttcccacctacttacaagtatgaagttaactcagataaatatgtgggtgaggacacacaagaaggggaaaaaaagagatctccagcatggtaag |
40775219 |
T |
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| Q |
119 |
tgcaagcatgtgaattttttgttgttgcatgaattagacactataattatgcgtaagattatgcaggtgtgatcgcatattgtggcttggaaaaggaata |
218 |
Q |
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| T |
40775218 |
tgcaagcatgtgaatgttttgttattgcatgaattagacactataattatgcgtaagattatgcaggtgtgatcgcatattgtggcttggaaaaggaata |
40775119 |
T |
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| Q |
219 |
aagcaactaaagtatcagagtgcagaaaatcagctttca |
257 |
Q |
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| T |
40775118 |
aagcaacttaagtatcaaagtgcagaaaatcagctttca |
40775080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 4679898 - 4679965
Alignment:
| Q |
179 |
atgcaggtgtgatcgcatattgtggcttggaaaaggaataaagcaactaaagtatcagagtgcagaaa |
246 |
Q |
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| T |
4679898 |
atgcaggtgtgatcgaatattgtggctaggaaaaggaataaagcaactaaattatgaacgtgcagaaa |
4679965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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