View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_low_48 (Length: 270)
Name: NF11386_low_48
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_48 |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: scaffold0121 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 26371 - 26625
Alignment:
| Q |
1 |
gagattaatggaaaggagggagtccaagtaacaagccaaatcatctctacccatatcaatagccatgcacaagcagtggtaaattgctgccagctccgcc |
100 |
Q |
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| T |
26371 |
gagattaatggaaaggagggagtccaagtaacaagccaaattatctctacccatatcaatggccatgcacaagcagtggtaatttgttgtcagctccgcc |
26470 |
T |
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| Q |
101 |
nnnnnnntgtcttcaaaatgggagatcatacacaagaatttggagagggaaagaccccaattgttgcggaaaatgccgccaaaactagtacggataggag |
200 |
Q |
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| T |
26471 |
aaaaaaatgtcttcaaaatgggagatcatacacgagaatgtagagagggaaagaccccaattgttgcggaaaatgccgccaaaaccagtacggataggag |
26570 |
T |
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| Q |
201 |
tcccattgcaacttccgtctacatttagaatggtgcccatgtggttgtcgcaatt |
255 |
Q |
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| T |
26571 |
tcccattgcaacttccgtctacatttagaacggtgcccatgtggttgtcgcaatt |
26625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 50521913 - 50522167
Alignment:
| Q |
1 |
gagattaatggaaaggagggagtccaagtaacaagccaaatcatctctacccatatcaatagccatgcacaagcagtggtaaattgctgccagctccgcc |
100 |
Q |
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| T |
50521913 |
gagattaatggaaaggagggaatttgagtaacaagccaaatcatctacacccatgtcaatagccatgcacaagcgatgatagattgttgttagttcagct |
50522012 |
T |
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| Q |
101 |
nnnnnnntgtcttcaaaatgggagatcatacacaagaatttggagagggaaagaccccaattgttgcggaaaatgccgccaaaactagtacggataggag |
200 |
Q |
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| T |
50522013 |
agcaaaatgtcttctgattgggagatcatgcatgagaaagccgagaggaaaagacccccattattgcgaaaaacaccgccaaaactagttcgaataggag |
50522112 |
T |
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| Q |
201 |
tcccattgcaacttccgtctacatttagaatggtgcccatgtggttgtcgcaatt |
255 |
Q |
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| T |
50522113 |
ttccattgcaactcccatcaacattcagaatggtgcccatatgattgttgcaatt |
50522167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 1089983 - 1089903
Alignment:
| Q |
1 |
gagattaatggaaaggagggagtccaagtaacaagccaaatcatctctacccatatcaatagccatgcacaagcagtggta |
81 |
Q |
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| T |
1089983 |
gagattaatggaaagtagggaatctcagtaacaagacaaatcgtctatacccatatcaatagccatgcgcaagctgtggta |
1089903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 45124592 - 45124822
Alignment:
| Q |
1 |
gagattaatggaaaggagggagtccaagtaacaagccaaatcatctctacccatatcaatagccatgcacaagcagtggtaaattgctgccagctccgcc |
100 |
Q |
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|||||||||||| |||||||| ||| ||||||| |||||||||||| |||| || |||| |||||||| ||||| ||| || |||| || || || ||| |
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| T |
45124592 |
gagattaatggagaggagggaatccgagtaacatgccaaatcatctatacctatgtcaacagccatgcgcaagccgtgatagattgttgttagttcagcc |
45124691 |
T |
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| Q |
101 |
nnnnnnntgtcttcaaaatgggagatcatacacaagaatttggagagggaaagaccccaattgttgcggaaaatgccgccaaaactagtacggataggag |
200 |
Q |
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| T |
45124692 |
aacaaaatgtctacttaatgggagatcatacctgagaaagccgagaggaaaagacccc-attattgcgaaaaatgccgccaaaaccagtacgggttggag |
45124790 |
T |
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| Q |
201 |
tcccattgcaacttccgtctacatttagaatg |
232 |
Q |
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| T |
45124791 |
taccattgcaactcccatcaacattcagaatg |
45124822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 32132301 - 32132377
Alignment:
| Q |
159 |
aattgttgcggaaaatgccgccaaaactagtacggataggagtcccattgcaacttccgtctacatttagaatggtgc |
236 |
Q |
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| T |
32132301 |
aattgttgcggaacacgccaccaaaacg-gtacgaataggagtcccgttacagcttccgtctacattcagaatggtgc |
32132377 |
T |
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