View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386_low_5 (Length: 658)
Name: NF11386_low_5
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 526; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 11 - 642
Target Start/End: Complemental strand, 37182141 - 37181527
Alignment:
| Q |
11 |
cataggcgaatctgtttgttattggaccgcaaattattaagtttagtctatcctttatgatatatagtggtcataaacaagaaagaattcatcataattg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37182141 |
cataggcgaatctgtttgttattggaccgcaaattattaagtttagtctatcctttatgagatatagtggtcataaacaagaaagaattcatcataattg |
37182042 |
T |
|
| Q |
111 |
tatataaaagtgtatgtgtattcaacatcaataaattaaattcaaaagtacaagcaatagtaccaaactggtaagtagaaaagnnnnnnntacaaaggct |
210 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37182041 |
tatataaatgtgtatgtgtattcaacatcaataaattaaattcaaaagtacaagcaatagtaccaaactggtaagtagaaaagaaaaaaatacaaaggct |
37181942 |
T |
|
| Q |
211 |
ttttactccgtaaaataaaacaaagatacaacaatcatcataacctcgtacaatttcatcacacacaatcaagaaatgatgcaatgcctattgcatgtat |
310 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37181941 |
ttttactccgtacaataaaacaaagatacaacaatcatcataacctcgtacaatttcatcacacacaatcaagaaatgatgcaatgtctattgcatgtat |
37181842 |
T |
|
| Q |
311 |
aattagctgatcacataatgcaacttggaaagaagtgtttaagggctagaggttgaaggtggcggtgagagaaatgggaaggaggggaaagtggttggga |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
37181841 |
--ttagctgatcacataatgcaacttggaaagaagtgtttaagggctagaggttgaaggtggtgg---------------ggaggggaaagtggttggga |
37181759 |
T |
|
| Q |
411 |
ttgaaggaaggtttggaagtgaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcat |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37181758 |
ttgaaggaaggtttggaagtgaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcat |
37181659 |
T |
|
| Q |
511 |
agtgagtttaggcatagaagggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaaggtggtaatgttgttggttttggt |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37181658 |
agtgagtttaggcatagaagggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaaggtggtaatgttgttggttttggt |
37181559 |
T |
|
| Q |
611 |
aaagtgggaatggttggtaaatttggttgtgt |
642 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |
|
|
| T |
37181558 |
aaagtgggaatggctggtaaatttggttgtgt |
37181527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 130 - 643
Target Start/End: Original strand, 37187393 - 37187894
Alignment:
| Q |
130 |
attcaacatcaataa-attaaattcaaaagtacaagcaatagtaccaaactggtaagtagaaa---agnnnnnnn-tacaaaggctttttactccgtaaa |
224 |
Q |
| |
|
||||||||||||||| || |||||||| ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||| | |
|
|
| T |
37187393 |
attcaacatcaataatataaaattcaatagtacaagcaatagtgccaaactggtaagtagaaagaaagaaaacaaatacaaaggctttttactccgtaca |
37187492 |
T |
|
| Q |
225 |
ataaaacaaagatacaacaatcatcataacctcgtacaatttcatcacacacaatcaagaaatgatgcaatgcctattgcatgtataattagctgatcac |
324 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||| |||||||||| | |
|
|
| T |
37187493 |
atacaacaaagatactacaatcatcataacctcgtagaatttcatcacacacaatcaagaaatgatacaatgtctattgcaagtat--ttagctgatcgc |
37187590 |
T |
|
| Q |
325 |
ataatgcaacttggaaagaagtgtttaagggctagaggttgaaggtggcggtgagagaaatgggaaggaggggaaagtggttgggattgaaggaaggttt |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||| |
|
|
| T |
37187591 |
ataatgcaacttggaaagaagtgtttaagggctagatgttgaaggtggtgg---------------ggaggggaaagtggttgggattgaaggaatgttg |
37187675 |
T |
|
| Q |
425 |
ggaagtgaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggca |
524 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
37187676 |
ggaagtgaagtggctgctggcaatggtggaatgttgagagatggaattgttggaaaatttgtaggaaagctaggaagtggtggcatagtgagtttaggca |
37187775 |
T |
|
| Q |
525 |
tagaagggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaaggtggtaatgttgttggttttggtaaagtgggaatggt |
624 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||| | |
|
|
| T |
37187776 |
tagaagggatagtaggcaatggaggaagatttccctgaggcatatttggaattgaaggcaaaggtggtaatgtagttggatttggtaaattgggaatgtt |
37187875 |
T |
|
| Q |
625 |
tggtaaatttggttgtgtt |
643 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
37187876 |
aggcaaatttggttgtgtt |
37187894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 340 - 642
Target Start/End: Complemental strand, 37189946 - 37189644
Alignment:
| Q |
340 |
aagaagtgtttaagggctagaggttgaaggtggcggtgagagaaatgggaaggaggggaaagtggttgggattgaaggaaggtttggaagtgaagtgact |
439 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37189946 |
aagaagtgtttaaggactagaggttgaaggtggtggggagaaaaatgggatggaggggaaagtggttgggattgaaggaaggtttggaagtgaagtgact |
37189847 |
T |
|
| Q |
440 |
gctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtag |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37189846 |
gctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtag |
37189747 |
T |
|
| Q |
540 |
gcaatggaggaagatttccttgaggcatatttggaattgaaggtaaaggtggtaatgttgttggttttggtaaagtgggaatggttggtaaatttggttg |
639 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37189746 |
gcaatggaggaagatttccttgaggcatatttggaattgaaggtaaaggtggtaatgttgttggttttggtaaagtgggaatggttggtaaatttggttg |
37189647 |
T |
|
| Q |
640 |
tgt |
642 |
Q |
| |
|
||| |
|
|
| T |
37189646 |
tgt |
37189644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 341 - 642
Target Start/End: Original strand, 37179909 - 37180210
Alignment:
| Q |
341 |
agaagtgtttaagggctagaggttgaaggtggcggtgagagaaatgggaaggaggggaaagtggttgggattgaaggaaggtttggaagtgaagtgactg |
440 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| || |||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37179909 |
agaaatgtttaaggactagaggttgaaggtggtggggagaaaaatggaatggaggggaaagtggttgggattgaaggaaggtttggaagtgaagtgactg |
37180008 |
T |
|
| Q |
441 |
ctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtagg |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37180009 |
ctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtagg |
37180108 |
T |
|
| Q |
541 |
caatggaggaagatttccttgaggcatatttggaattgaaggtaaaggtggtaatgttgttggttttggtaaagtgggaatggttggtaaatttggttgt |
640 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37180109 |
caatggaggaagatttccttgaggcatatttggaattgaaggtaaaggtggtaatgttgttggttttggtaaagtgggaatggttggtaaatttggttgt |
37180208 |
T |
|
| Q |
641 |
gt |
642 |
Q |
| |
|
|| |
|
|
| T |
37180209 |
gt |
37180210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 291 - 386
Target Start/End: Original strand, 37204011 - 37204104
Alignment:
| Q |
291 |
gcaatgcctattgcatgtataattagctgatcacataatgcaacttggaaagaagtgtttaagggctagaggttgaaggtggcggtgagagaaatg |
386 |
Q |
| |
|
|||||| |||||||||| || || |||||||||||| ||||||||||||| | ||||||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
37204011 |
gcaatgtctattgcatgcat--ttggctgatcacatattgcaacttggaaacatgtgtttaagggctagaggttgaaagtggaggggagagaaatg |
37204104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 534 - 582
Target Start/End: Original strand, 38704220 - 38704268
Alignment:
| Q |
534 |
tagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38704220 |
tagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg |
38704268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 37179592 - 37179658
Alignment:
| Q |
224 |
aataaaacaaagatacaacaatcatcataacctcgtacaatttcatcacacacaatcaagaaatgat |
290 |
Q |
| |
|
|||| ||||||||||| | ||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
37179592 |
aatacaacaaagatactaatatcatcataacctagtacaatttcatcacacacaataaagaaatgat |
37179658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 37203887 - 37203948
Alignment:
| Q |
130 |
attcaacatcaataaattaaattcaaaagtacaagcaatagtaccaaactggtaagtagaaa |
191 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
37203887 |
attcaacatcaataatataaattcaaaagtacaagaaatagtgccaaactggcaagtagaaa |
37203948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 275
Target Start/End: Complemental strand, 37190133 - 37189986
Alignment:
| Q |
134 |
aacatcaataaattaaattcaaaagtacaagcaatagtaccaaactggtaagtagaaaagnnnnnnntacaaaggctttttactccgtaaaataaaacaa |
233 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||| || || || |||| ||||| |
|
|
| T |
37190133 |
aacatcaataacagaaattcaaaagtacaaacaatagtgccaaacaggtaagtagaaaaaaaaataatacaaaggcttttcacaccatacaatacaacaa |
37190034 |
T |
|
| Q |
234 |
ag------atacaacaatcatcataacctcgtacaatttcatcacaca |
275 |
Q |
| |
|
|| ||| || ||||||||||||||||||||||| |||||||| |
|
|
| T |
37190033 |
agataataatagtactatcatcataacctcgtacaatttaatcacaca |
37189986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 38703976 - 38704013
Alignment:
| Q |
130 |
attcaacatcaataaattaaattcaaaagtacaagcaa |
167 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38703976 |
attcaacatcaataatataaattcaaaagtacaagcaa |
38704013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 362 - 564
Target Start/End: Complemental strand, 27096897 - 27096701
Alignment:
| Q |
362 |
gttgaaggtggcggtgagagaaatgggaaggaggggaaagtggttgggattgaaggaaggtttggaagtgaagtgactgctggcaatggtggaatgttga |
461 |
Q |
| |
|
||||||||||| || |||| || |||| ||||| || | |||||| ||||||||||| ||| ||||||||| || | ||| |||||||||| ||||| |
|
|
| T |
27096897 |
gttgaaggtggtggagagaagaaagggatggaggagataatggttgagattgaaggaatgttgggaagtgaattg---gatggaaatggtggaaagttga |
27096801 |
T |
|
| Q |
462 |
gagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtaggcaatggaggaagatttccttg |
561 |
Q |
| |
|
||||||||| ||||||| || ||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
27096800 |
gagatggaagtgttgga---ttggtaggaatgctaggaagtggtggcatagtgagcttaggcatagaagggatagtaggcaatggaggaacattaccttg |
27096704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 351 - 564
Target Start/End: Complemental strand, 27103211 - 27103004
Alignment:
| Q |
351 |
aagggctagaggttgaaggtggcggtgagagaaatgggaaggaggggaaagtggttgggattgaaggaaggtttggaagtgaagtgactgctggcaatgg |
450 |
Q |
| |
|
||||| |||| ||||||||||| || |||| || |||| ||||| || | |||||| ||||||||||||||| ||||||||| || | ||| ||||| |
|
|
| T |
27103211 |
aaggggtagatgttgaaggtggtggagagaagaaagggatggaggagataatggttgagattgaaggaaggttgggaagtgaattg---gatggaaatgg |
27103115 |
T |
|
| Q |
451 |
tggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtaggcaatggagga |
550 |
Q |
| |
|
||||| |||||||||||||| ||||||| || || |||| || |||||||||||||||||||| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
27103114 |
tggaaagttgagagatggaagtgttgga---ttggttggaatgctaggaagtggtggcatagtgagcttaggcactgaagggatggtaggcaatggagga |
27103018 |
T |
|
| Q |
551 |
agatttccttgagg |
564 |
Q |
| |
|
| ||| |||||||| |
|
|
| T |
27103017 |
acattaccttgagg |
27103004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 598 - 642
Target Start/End: Complemental strand, 27102898 - 27102854
Alignment:
| Q |
598 |
tgttggttttggtaaagtgggaatggttggtaaatttggttgtgt |
642 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
27102898 |
tgttggttttggtaaagtgggaatgcttggcaaattgggttgtgt |
27102854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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