View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386_low_52 (Length: 253)

Name: NF11386_low_52
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386_low_52
NF11386_low_52
[»] chr4 (1 HSPs)
chr4 (1-238)||(37875852-37876095)
[»] chr2 (1 HSPs)
chr2 (1-238)||(23895586-23895829)
[»] chr8 (8 HSPs)
chr8 (64-153)||(18138922-18139011)
chr8 (64-147)||(18097242-18097325)
chr8 (151-223)||(18138819-18138891)
chr8 (1-57)||(18097152-18097208)
chr8 (1-57)||(18139045-18139101)
chr8 (92-150)||(18106388-18106446)
chr8 (150-196)||(18106479-18106525)
chr8 (150-223)||(18097361-18097434)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37875852 - 37876095
Alignment:
Q  1 caattaaaacctaattgatagatataaatttcctatttactctactctgtttatgtaatgtggaaaagcctaaggccttgttgcttcaataaataattag 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37875852 caattaaaacctaattgattgatataaatttcctatttactctactatgtttatgtaatgtggaaaagcctaaggccttgttgcttcaataaataattag 37875951  T
Q  101 ttttaagccattcaggcatgttgcgcttagag------tgtgccacatgatcagtgaattgttttgttgcttcagaatgatgactctccacatcatatgc 194  Q
    ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37875952 ttttaagccattcaggcatgttgcgcttagagtactgctgtgccacatgatcagtgaattgttttgttgcttcagaatgatgactctccacatcatatgc 37876051  T
Q  195 ctttcctcagcaccaaaggtatggtattggtttatttgcttcat 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37876052 ctttcctcagcaccaaaggtatggtattggtttatttgcttcat 37876095  T

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Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 23895829 - 23895586
Alignment:
Q  1 caattaaaacctaattgatagatataaatttcctatttactctactctgtttatgtaatgtggaaaagcctaaggccttgttgcttcaataaataattag 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23895829 caattaaaacctaattgattgatataaatttcctatttactctactatgtttatgtaatgtggaaaagcctaaggccttgttgcttcaataaataattag 23895730  T
Q  101 ttttaagccattcaggcatgttgcgcttagag------tgtgccacatgatcagtgaattgttttgttgcttcagaatgatgactctccacatcatatgc 194  Q
    ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23895729 ttttaagccattcaggcatgttgcgcttagagtactgctgtgccacatgatcagtgaattgttttgttgcttcagaatgatgactctccacatcatatgc 23895630  T
Q  195 ctttcctcagcaccaaaggtatggtattggtttatttgcttcat 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  23895629 ctttcctcagcaccaaaggtatggtattggtttatttgcttcat 23895586  T

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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 18139011 - 18138922
Alignment:
Q  64 aaaagcctaaggccttgttgcttcaataaataattagttttaagccattcaggcatgttgcgcttagagtgtgccacatgatcagtgaat 153  Q
    |||||| | |||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||    
T  18139011 aaaagcttgaggccttgttgcttcaattagtaattagttttaagccattcaggcatgttgtgcttagagtgtgccacttgatcaatgaat 18138922  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 18097242 - 18097325
Alignment:
Q  64 aaaagcctaaggccttgttgcttcaataaataattagttttaagccattcaggcatgttgcgcttagagtgtgccacatgatca 147  Q
    |||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||    
T  18097242 aaaagcttaaggtcttgtttcttcaattaataattagttttaagccattcaggcatgttgtgcttagactgtgccacttgatca 18097325  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 18138891 - 18138819
Alignment:
Q  151 aattgttttgttgcttcagaatgatgactctccacatcatatgcctttcctcagcaccaaaggtatggtattg 223  Q
    |||||||||||||||||||||||| || | |||||||||||  |||||| |||||||||||||||||||||||    
T  18138891 aattgttttgttgcttcagaatgacgattttccacatcatacacctttcgtcagcaccaaaggtatggtattg 18138819  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18097152 - 18097208
Alignment:
Q  1 caattaaaacctaattgatagatataaatttcctatttactctactctgtttatgta 57  Q
    ||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||    
T  18097152 caattaaaacctaattgattgaaataaattgcctatttactctactctgtttatgta 18097208  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 18139101 - 18139045
Alignment:
Q  1 caattaaaacctaattgatagatataaatttcctatttactctactctgtttatgta 57  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||    
T  18139101 caattaaaacctaattgattgatataaattgcctatttactctactttgtttatgta 18139045  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 150
Target Start/End: Original strand, 18106388 - 18106446
Alignment:
Q  92 aataattagttttaagccattcaggcatgttgcgcttagagtgtgccacatgatcagtg 150  Q
    |||||||||||||||||||||| ||||||||| || |||||| ||||||||||||||||    
T  18106388 aataattagttttaagccattcgggcatgttgtgcctagagtatgccacatgatcagtg 18106446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 18106479 - 18106525
Alignment:
Q  150 gaattgttttgttgcttcagaatgatgactctccacatcatatgcct 196  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  18106479 gaattgttttgttgcttcagaatgatgattctccacatcatatgcct 18106525  T

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Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 18097361 - 18097434
Alignment:
Q  150 gaattgttttgttgcttcagaatgatgactctccacatcatatgcctttcctcagcaccaaaggtatggtattg 223  Q
    ||||||||||||||||||||||||| || | |||||||||||  |||||  ||||| |||||||||||||||||    
T  18097361 gaattgttttgttgcttcagaatgacgattttccacatcatactccttttgtcagctccaaaggtatggtattg 18097434  T

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