View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386_low_6 (Length: 639)

Name: NF11386_low_6
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386_low_6
NF11386_low_6
[»] chr2 (3 HSPs)
chr2 (33-630)||(31752316-31752916)
chr2 (518-553)||(30558843-30558878)
chr2 (532-564)||(23243749-23243781)
[»] chr7 (5 HSPs)
chr7 (518-568)||(2724439-2724489)
chr7 (520-563)||(8273038-8273081)
chr7 (520-564)||(779241-779285)
chr7 (534-562)||(779367-779395)
chr7 (532-564)||(34868223-34868255)
[»] chr4 (2 HSPs)
chr4 (516-564)||(52388667-52388715)
chr4 (532-563)||(12417091-12417122)
[»] chr8 (5 HSPs)
chr8 (520-564)||(15699548-15699592)
chr8 (518-562)||(35577099-35577144)
chr8 (520-564)||(17919321-17919365)
chr8 (520-564)||(18977406-18977450)
chr8 (520-564)||(20991265-20991309)
[»] chr6 (3 HSPs)
chr6 (515-562)||(23107468-23107515)
chr6 (520-564)||(4279791-4279835)
chr6 (520-568)||(23107532-23107580)
[»] chr3 (5 HSPs)
chr3 (528-562)||(809245-809279)
chr3 (520-553)||(809296-809329)
chr3 (520-564)||(10497460-10497504)
chr3 (520-564)||(11134287-11134331)
chr3 (520-564)||(19777565-19777609)
[»] scaffold0050 (1 HSPs)
scaffold0050 (520-564)||(74179-74224)
[»] chr5 (1 HSPs)
chr5 (538-567)||(17855704-17855733)
[»] chr1 (5 HSPs)
chr1 (523-564)||(19454135-19454176)
chr1 (520-561)||(23353130-23353171)
chr1 (532-564)||(22224756-22224788)
chr1 (520-564)||(40608750-40608794)
chr1 (520-564)||(52909732-52909776)
[»] scaffold2018 (1 HSPs)
scaffold2018 (520-564)||(894-938)
[»] scaffold0009 (1 HSPs)
scaffold0009 (520-564)||(72368-72412)


Alignment Details
Target: chr2 (Bit Score: 498; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 33 - 630
Target Start/End: Original strand, 31752316 - 31752916
Alignment:
Q  33 aataatgagaagcatatttggttaagaagaaatctttaatgaagctaaaaactgaaagagagacatgaaaaaatgacaaatcttaagttgttctccgaca 132  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31752316 aatagtgagaagcatatttggttaagaagaaatctttaatggagctaaaaactgaaagagagacatgaaaaaatgaccaatcttaagttgttctccgaca 31752415  T
Q  133 cataccatttaaatctattctgaccattcaaacatataaaagggggaaggacattaatacatattctccatgattaacagttgcttaaaagcatattggt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31752416 cataccatttaaatctattctgaccattcaaacatataaaagggggaaggacattaatacatattctccatgattaagagttgcttaaaagcatattggt 31752515  T
Q  233 taagaaatcattactggagttaaaaattgaaagatagtaatgtaaaaaatgataatcttatgttattgttcgacacataccaatttttgtgtgtaa--ag 330  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||  ||    
T  31752516 taagaaatcattaccggagttaaaaattgaaagatagtaatgtaaaaaatgataatcttatgttattcttcgacacataccaatttttgtgagtaaatag 31752615  T
Q  331 aatattatctacgcgcagctacgtggattaatacctcaagttagataggatcgcaatgaacaaattatataatt-acattttaacgtgtcaatacaatta 429  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  31752616 aatattatctacgcgcaactgcatggattaatacctcaagttagataggatcgcaatgaacaaattatataattaacattttaacgtgtcgatacaatta 31752715  T
Q  430 atatgcttcgactttatagcaggggaacacagataaaatggacaattgtagtcataagtacaaaatcacgacctagtcactccatctcaccacttcgtct 529  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  31752716 atatgcttcgactttataggaggggaacacacataaaatagacaattgtagtcataagtacaaaatcacgacctagtcactccagatcaccacttcgtct 31752815  T
Q  530 tctcccaagactcgtgcttggggggttgtggaccgccaactacacttctaagaaccggggtccctcagaaaggacccccgtatcctacagaagggcctat 629  Q
    ||||||||||||||||||||||||| ||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31752816 tctcccaagactcgtgcttggggggctgtggaccgtcaagtacacttttaagaaccggggtccctcagaaaggacccccgtaccctacagaagggcctat 31752915  T
Q  630 g 630  Q
    |    
T  31752916 g 31752916  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 553
Target Start/End: Complemental strand, 30558878 - 30558843
Alignment:
Q  518 accacttcgtcttctcccaagactcgtgcttggggg 553  Q
    ||||||||| ||||||||||||||||||||||||||    
T  30558878 accacttcgccttctcccaagactcgtgcttggggg 30558843  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 532 - 564
Target Start/End: Original strand, 23243749 - 23243781
Alignment:
Q  532 tcccaagactcgtgcttggggggttgtggaccg 564  Q
    ||||||||||||||||||||||| |||||||||    
T  23243749 tcccaagactcgtgcttggggggctgtggaccg 23243781  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 518 - 568
Target Start/End: Original strand, 2724439 - 2724489
Alignment:
Q  518 accacttcgtcttctcccaagactcgtgcttggggggttgtggaccgccaa 568  Q
    ||||||||| ||| ||||||||||||||||||||||| |||||||||||||    
T  2724439 accacttcgccttgtcccaagactcgtgcttggggggctgtggaccgccaa 2724489  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 563
Target Start/End: Complemental strand, 8273081 - 8273038
Alignment:
Q  520 cacttcgtcttctcccaagactcgtgcttggggggttgtggacc 563  Q
    ||||||| ||| |||||||||||||||||||| |||||||||||    
T  8273081 cacttcgccttatcccaagactcgtgcttgggaggttgtggacc 8273038  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 564
Target Start/End: Complemental strand, 779285 - 779241
Alignment:
Q  520 cacttcgtcttctcccaagactcgtgcttggggggttgtggaccg 564  Q
    ||||||| ||| ||||||||||||||||||||| |||||| ||||    
T  779285 cacttcgccttgtcccaagactcgtgcttggggagttgtgtaccg 779241  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 562
Target Start/End: Complemental strand, 779395 - 779367
Alignment:
Q  534 ccaagactcgtgcttggggggttgtggac 562  Q
    |||||||||||||||||||||||||||||    
T  779395 ccaagactcgtgcttggggggttgtggac 779367  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 532 - 564
Target Start/End: Complemental strand, 34868255 - 34868223
Alignment:
Q  532 tcccaagactcgtgcttggggggttgtggaccg 564  Q
    |||||||||||||| ||||||||||||||||||    
T  34868255 tcccaagactcgtgtttggggggttgtggaccg 34868223  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 564
Target Start/End: Complemental strand, 52388715 - 52388667
Alignment:
Q  516 tcaccacttcgtcttctcccaagactcgtgcttggggggttgtggaccg 564  Q
    ||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  52388715 tcaccacttcgccttgtcccaagactcgtgcttggggggctgtggaccg 52388667  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 532 - 563
Target Start/End: Original strand, 12417091 - 12417122
Alignment:
Q  532 tcccaagactcgtgcttggggggttgtggacc 563  Q
    ||||||||||||||||||||||||||||||||    
T  12417091 tcccaagactcgtgcttggggggttgtggacc 12417122  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 564
Target Start/End: Complemental strand, 15699592 - 15699548
Alignment:
Q  520 cacttcgtcttctcccaagactcgtgcttggggggttgtggaccg 564  Q
    ||||||| ||| |||||||||||||||||||| ||||||||||||    
T  15699592 cacttcgccttgtcccaagactcgtgcttgggaggttgtggaccg 15699548  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 562
Target Start/End: Original strand, 35577099 - 35577144
Alignment:
Q  518 accacttcgtcttctcccaagactcgtgcttgggggg-ttgtggac 562  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||||||    
T  35577099 accacttcgccttgtcccaagactcgtgcttggggggcttgtggac 35577144  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 564
Target Start/End: Original strand, 17919321 - 17919365
Alignment:
Q  520 cacttcgtcttctcccaagactcgtgcttggggggttgtggaccg 564  Q
    ||||||||||| ||||||||||||||||| || | ||||||||||    
T  17919321 cacttcgtcttatcccaagactcgtgcttaggtgattgtggaccg 17919365  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 564
Target Start/End: Original strand, 18977406 - 18977450
Alignment:
Q  520 cacttcgtcttctcccaagactcgtgcttggggggttgtggaccg 564  Q
    ||||||| ||| | ||||| |||||||||||||||||||||||||    
T  18977406 cacttcgccttgttccaagcctcgtgcttggggggttgtggaccg 18977450  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 564
Target Start/End: Original strand, 20991265 - 20991309
Alignment:
Q  520 cacttcgtcttctcccaagactcgtgcttggggggttgtggaccg 564  Q
    ||||||| ||| |||||||||||||| |||||| |||||||||||    
T  20991265 cacttcgccttgtcccaagactcgtgtttggggagttgtggaccg 20991309  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 562
Target Start/End: Original strand, 23107468 - 23107515
Alignment:
Q  515 ctcaccacttcgtcttctcccaagactcgtgcttggggggttgtggac 562  Q
    |||| ||||||||||| ||||||||||| || ||||||||||||||||    
T  23107468 ctcatcacttcgtcttgtcccaagactcatgtttggggggttgtggac 23107515  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 564
Target Start/End: Complemental strand, 4279835 - 4279791
Alignment:
Q  520 cacttcgtcttctcccaagactcgtgcttggggggttgtggaccg 564  Q
    ||||||||||| | ||||| ||||||||||||||| |||||||||    
T  4279835 cacttcgtcttgttccaagcctcgtgcttggggggctgtggaccg 4279791  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 568
Target Start/End: Original strand, 23107532 - 23107580
Alignment:
Q  520 cacttcgtcttctcccaagactcgtgcttggggggttgtggaccgccaa 568  Q
    ||||||| ||| ||||||| |||||||||||| || |||||||||||||    
T  23107532 cacttcgccttgtcccaaggctcgtgcttgggcggctgtggaccgccaa 23107580  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 528 - 562
Target Start/End: Original strand, 809245 - 809279
Alignment:
Q  528 cttctcccaagactcgtgcttggggggttgtggac 562  Q
    |||||| ||||||||||||||||||||||||||||    
T  809245 cttctctcaagactcgtgcttggggggttgtggac 809279  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 553
Target Start/End: Original strand, 809296 - 809329
Alignment:
Q  520 cacttcgtcttctcccaagactcgtgcttggggg 553  Q
    ||||||| ||||||||||||||||||||||||||    
T  809296 cacttcgccttctcccaagactcgtgcttggggg 809329  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 564
Target Start/End: Original strand, 10497460 - 10497504
Alignment:
Q  520 cacttcgtcttctcccaagactcgtgcttggggggttgtggaccg 564  Q
    ||||||| ||| |||||||||||||||||||| || |||||||||    
T  10497460 cacttcgccttgtcccaagactcgtgcttgggtggctgtggaccg 10497504  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 564
Target Start/End: Complemental strand, 11134331 - 11134287
Alignment:
Q  520 cacttcgtcttctcccaagactcgtgcttggggggttgtggaccg 564  Q
    ||||||| ||| | ||||| |||||||||||||||||||||||||    
T  11134331 cacttcgccttgttccaagcctcgtgcttggggggttgtggaccg 11134287  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 564
Target Start/End: Complemental strand, 19777609 - 19777565
Alignment:
Q  520 cacttcgtcttctcccaagactcgtgcttggggggttgtggaccg 564  Q
    ||||||| ||| | ||||| |||||||||||||||||||||||||    
T  19777609 cacttcgccttgttccaagcctcgtgcttggggggttgtggaccg 19777565  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 564
Target Start/End: Complemental strand, 74224 - 74179
Alignment:
Q  520 cacttcgtcttctcccaagactcgtgcttgggggg-ttgtggaccg 564  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||||||    
T  74224 cacttcgccttgtcccaagactcgtgcttggggggcttgtggaccg 74179  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 567
Target Start/End: Original strand, 17855704 - 17855733
Alignment:
Q  538 gactcgtgcttggggggttgtggaccgcca 567  Q
    ||||||||||||||||||||||||||||||    
T  17855704 gactcgtgcttggggggttgtggaccgcca 17855733  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 564
Target Start/End: Complemental strand, 19454176 - 19454135
Alignment:
Q  523 ttcgtcttctcccaagactcgtgcttggggggttgtggaccg 564  Q
    |||| ||| ||||||||||||||||||||||| |||||||||    
T  19454176 ttcgccttgtcccaagactcgtgcttggggggctgtggaccg 19454135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 561
Target Start/End: Original strand, 23353130 - 23353171
Alignment:
Q  520 cacttcgtcttctcccaagactcgtgcttggggggttgtgga 561  Q
    ||||||| ||| |||||||||| |||||||||||||||||||    
T  23353130 cacttcgccttgtcccaagacttgtgcttggggggttgtgga 23353171  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 532 - 564
Target Start/End: Complemental strand, 22224788 - 22224756
Alignment:
Q  532 tcccaagactcgtgcttggggggttgtggaccg 564  Q
    |||||||||||||||| ||||||||||||||||    
T  22224788 tcccaagactcgtgctaggggggttgtggaccg 22224756  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 564
Target Start/End: Original strand, 40608750 - 40608794
Alignment:
Q  520 cacttcgtcttctcccaagactcgtgcttggggggttgtggaccg 564  Q
    ||||||| ||| ||||||||||| ||||||||||| |||||||||    
T  40608750 cacttcgccttgtcccaagactcatgcttggggggctgtggaccg 40608794  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 564
Target Start/End: Complemental strand, 52909776 - 52909732
Alignment:
Q  520 cacttcgtcttctcccaagactcgtgcttggggggttgtggaccg 564  Q
    ||||||| ||| ||||||||||||||||||| ||| |||||||||    
T  52909776 cacttcgccttgtcccaagactcgtgcttggagggctgtggaccg 52909732  T

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Target: scaffold2018 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold2018
Description:

Target: scaffold2018; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 564
Target Start/End: Original strand, 894 - 938
Alignment:
Q  520 cacttcgtcttctcccaagactcgtgcttggggggttgtggaccg 564  Q
    ||||||||||| | ||||| ||||||||||||||| |||||||||    
T  894 cacttcgtcttgttccaagcctcgtgcttggggggctgtggaccg 938  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 564
Target Start/End: Complemental strand, 72412 - 72368
Alignment:
Q  520 cacttcgtcttctcccaagactcgtgcttggggggttgtggaccg 564  Q
    ||||||| ||||||||||| ||| ||||| |||||||||||||||    
T  72412 cacttcgccttctcccaaggctcatgctttgggggttgtggaccg 72368  T

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