View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_low_63 (Length: 240)
Name: NF11386_low_63
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3433743 - 3433965
Alignment:
| Q |
1 |
accactgggtgtagcacctgagggtagatctggtggtccacatgtagaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
3433743 |
accactgggtgtagcacctgagggtagatctggtggtccacatgtagaaaggtctggtgcggatattggagaagctagggcaaaagggttagcggtgaaa |
3433842 |
T |
|
| Q |
101 |
gtaccacaaagtcctccaaggccaattagaacattcctcctatttcctacaacaatgttttgtagttgttcttcttctttagggttgttttggttactat |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3433843 |
gtaccacaaagtcctccaaggccaactagaacattcctcctatttcctacaacaatgttttgtagttgttcttcttctttagggttgttttggttaccat |
3433942 |
T |
|
| Q |
201 |
tattaccactcaatgtgatcact |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
3433943 |
tattaccactcaatgtgatcact |
3433965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 3427559 - 3427774
Alignment:
| Q |
8 |
ggtgtagcacctgagggtagatctggtggtccacatgtagaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagtaccac |
107 |
Q |
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||||| |||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427559 |
ggtgttgcacctaagggtagatccggtggaccacatgttgaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagtaccac |
3427658 |
T |
|
| Q |
108 |
aaagtcctccaaggccaattagaacattcctcctatttcctacaacaatgttttgtagttgttcttcttctttagggttgttttggttactattattacc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||||| |
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| T |
3427659 |
aaagtcctccaaggccaattagaacattcctcctatttcctacaacaatgttttgtggttcttgttcctctttagggttgttttggttactattattacc |
3427758 |
T |
|
| Q |
208 |
actcaatgtgatcact |
223 |
Q |
| |
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|||||||||||||||| |
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| T |
3427759 |
actcaatgtgatcact |
3427774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 11912023 - 11911808
Alignment:
| Q |
8 |
ggtgtagcacctgagggtagatctggtggtccacatgtagaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagtaccac |
107 |
Q |
| |
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||||| |||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11912023 |
ggtgttgcacctaagggtagatccggtggaccacatgtagaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagtaccac |
11911924 |
T |
|
| Q |
108 |
aaagtcctccaaggccaattagaacattcctcctatttcctacaacaatgttttgtagttgttcttcttctttagggttgttttggttactattattacc |
207 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||| |
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| T |
11911923 |
aaagtcctccaaggccaattagaacatttctcctatttcctacaacaatgttttgtagttcttgttcttctttagggttgttttggttactaatattacc |
11911824 |
T |
|
| Q |
208 |
actcaatgtgatcact |
223 |
Q |
| |
|
||| |||||||||||| |
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|
| T |
11911823 |
actgaatgtgatcact |
11911808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 11896691 - 11896508
Alignment:
| Q |
40 |
acatgtagaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagtaccacaaagtcctccaaggccaattagaacattcctc |
139 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11896691 |
acatttagaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagtaccacaaagtcctccaaggccaattagaacatttctc |
11896592 |
T |
|
| Q |
140 |
ctatttcctacaacaatgttttgtagttgttcttcttctttagggttgttttggttactattattaccactcaatgtgatcact |
223 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
11896591 |
ctatttcctacaacaatgttttgtagttcttgttcttctttagggttgttttggttactaatattaccactgaatgtgatcact |
11896508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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