View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_low_71 (Length: 232)
Name: NF11386_low_71
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 8716396 - 8716200
Alignment:
| Q |
16 |
gaatgtgtttcaattgaaaattttcgtttgttgtatgttacgctcctaatcaaggcatgttttgaatatctcgttttgataagtgatgtcgcacaagagg |
115 |
Q |
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| T |
8716396 |
gaatgtgtttcaattgaaaattttcgtttgttgtatgttatgctcctaatcaa----tgttttgaatatctcgttttgataagtgatgtcgcacaagagg |
8716301 |
T |
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| Q |
116 |
aagtatccgttctagataatttattgagattcagagcaacatactgtaatgaactattaaatctgtggacgcacatgtggagaagaaggcataaggtttg |
215 |
Q |
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| T |
8716300 |
aagtatccgttctagataatttattgagattcagagcaacatactgtaatgaactattaaatttgtggacgcacatgtggagaagaaggcataaggtttg |
8716201 |
T |
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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 23443932 - 23443984
Alignment:
| Q |
16 |
gaatgtgtttcaattgaaaattttcgtttgttgtatgttacgctcctaatcaa |
68 |
Q |
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| T |
23443932 |
gaatgtgtttcaattgaaaattttcgtttgttgtatgttatgctccttatcaa |
23443984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 13733221 - 13733179
Alignment:
| Q |
163 |
aatgaactattaaatctgtggacgcacatgtggagaagaaggc |
205 |
Q |
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| T |
13733221 |
aatgaactattaaatttgtggacgcacatgtggagaaggaggc |
13733179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 13733334 - 13733292
Alignment:
| Q |
72 |
atgttttgaatatctcgttttgataagtgatgtc-gcacaaga |
113 |
Q |
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| T |
13733334 |
atgttttgaatatcttgttttgataagtgatgtctgcacaaga |
13733292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 45129346 - 45129384
Alignment:
| Q |
162 |
taatgaactattaaatctgtggacgcacatgtggagaag |
200 |
Q |
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| T |
45129346 |
taatgaactattaaatttgtggacccacatgtggagaag |
45129384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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