View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386_low_74 (Length: 205)
Name: NF11386_low_74
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_74 |
 | |
|
| [»] scaffold0071 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 156; Significance: 4e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 11317200 - 11317375
Alignment:
| Q |
18 |
caaccatttcagttgtgagatgatttttccaatctccaatattaccaagacggaaaaaagctttgttttccatattaagaaaacctttcccagtcttatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
11317200 |
caaccatttcagttgtgagatgatttttccaatctccaatattaccaagacggaaaaaagctttattttccatattaagaaaacctttcccgatcttatt |
11317299 |
T |
|
| Q |
118 |
gacctccaaattgctcaacttctcaaaactacacaaatttaatatatcatcaactaaacctttgaattcttcttct |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
11317300 |
gacctccaaattgctcaacttctcaaaactacacaaatttaatatatcatcaaccacacctttgaattcttcttct |
11317375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 11438865 - 11438934
Alignment:
| Q |
102 |
ctttcccagtcttattgacctccaaattgctcaacttctcaaaactacacaaatttaatatatcatcaac |
171 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11438865 |
ctttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaatttaatatatcatcaac |
11438934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 112 - 193
Target Start/End: Complemental strand, 15461389 - 15461308
Alignment:
| Q |
112 |
cttattgacctccaaattgctcaacttctcaaaactacacaaatttaatatatcatcaactaaacctttgaattcttcttct |
193 |
Q |
| |
|
|||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
15461389 |
cttatttacctccaagttgctcagcttctcaaaactacacaaatttaatatatcatcaaccactcctttagattcttcttct |
15461308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 22 - 193
Target Start/End: Complemental strand, 27544615 - 27544444
Alignment:
| Q |
22 |
catttcagttgtgagatgatttttccaatctccaatattaccaagacggaaaaaagctttgttttccatattaagaaaacctttcccagtcttattgacc |
121 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| || || |||||||| |||||||||||||| || | || ||| || |||||||||||| |
|
|
| T |
27544615 |
catttcagttgtgagaacatttttgcaatctccaactcggcctagccggaaaaagtatttgttttccatatcaaaagaaagttttcctgtcttattgacc |
27544516 |
T |
|
| Q |
122 |
tccaaattgctcaacttctcaaaactacacaaatttaatatatcatcaactaaacctttgaattcttcttct |
193 |
Q |
| |
|
||||| ||||||| |||||||||||||| | |||||||||||||||||| | ||||||| ||||||||||| |
|
|
| T |
27544515 |
tccaagttgctcagtttctcaaaactacatagatttaatatatcatcaaccatacctttggattcttcttct |
27544444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 27505166 - 27504991
Alignment:
| Q |
18 |
caaccatttcagttgtgagatgatttttccaatctccaatattaccaagacggaaaaaagctttgttttccatattaagaa-aacctttcccagtcttat |
116 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||| || |||||||||||||| |||||||| || || || || |||||| |||||| |
|
|
| T |
27505166 |
caaccattttagttgtgagaagatttttccaatctccaactttgccaagacggaaaaagttcttgttttcaat-ttccgacgaaattttcccgttcttat |
27505068 |
T |
|
| Q |
117 |
tgacctccaaattgctcaacttctcaaaactacacaaatttaatatatcatcaactaaacctttgaattcttcttct |
193 |
Q |
| |
|
||| |||||| ||||| | |||||||||||||||||||| ||||||||||||||| | ||| ||| ||||||||||| |
|
|
| T |
27505067 |
tgatctccaagttgctaagcttctcaaaactacacaaatgtaatatatcatcaaccacaccattggattcttcttct |
27504991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 27498841 - 27498899
Alignment:
| Q |
110 |
gtcttattgacctccaaattgctcaacttctcaaaactacacaaatttaatatatcatc |
168 |
Q |
| |
|
||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
27498841 |
gtcttgttgacctccaagttgcttaagttctcaaaactacacaaatttaatatatcatc |
27498899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 27496584 - 27496666
Alignment:
| Q |
110 |
gtcttattgacctccaaattgctcaacttctcaaaactacacaaatttaatatatcatcaactaaacctttgaattcttcttc |
192 |
Q |
| |
|
||||||| ||| ||||| |||| || ||||||||||||||||||||||||| ||||||||| | || ||| |||||||||| |
|
|
| T |
27496584 |
gtcttatcgacttccaagttgcccagattctcaaaactacacaaatttaataaatcatcaaccatgccgttggattcttcttc |
27496666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 27500704 - 27500639
Alignment:
| Q |
99 |
aacctttcccagtcttattgacctccaaattgctcaacttctcaaaactacacaaatttaatatat |
164 |
Q |
| |
|
||||||| || |||||||| ||||||||| | |||| ||||||||||||||||| || |||||||| |
|
|
| T |
27500704 |
aaccttttcctgtcttattaacctccaaactactcatcttctcaaaactacacagatctaatatat |
27500639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 27496496 - 27496561
Alignment:
| Q |
22 |
catttcagttgtgagatgatttttccaatctccaatattaccaagacggaaaaaagctttgttttc |
87 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| | ||| || ||||||||||||| ||||| |
|
|
| T |
27496496 |
catttctgttgtgagaagatttttccaatctccaacttgtccacgatggaaaaaagctttattttc |
27496561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 112 - 193
Target Start/End: Original strand, 803 - 884
Alignment:
| Q |
112 |
cttattgacctccaaattgctcaacttctcaaaactacacaaatttaatatatcatcaactaaacctttgaattcttcttct |
193 |
Q |
| |
|
|||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
803 |
cttatttacctccaagttgctcagcttctcaaaactacacaaatttaatatatcatcaaccactcctttagattcttcttct |
884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University