View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_low_8 (Length: 595)
Name: NF11386_low_8
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_8 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 1e-92; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 415 - 595
Target Start/End: Original strand, 26740492 - 26740672
Alignment:
| Q |
415 |
tataaaactagggatcaatgcattagaatatctatagtcaaattgcattgcatacattcaaatctcgcagtatttttgcacagttcattgccatgttcat |
514 |
Q |
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| T |
26740492 |
tataaaaccagggatcaatgcattagaatatctatagtcaaattgcattgcatacattcaaatctcgcagtatttttgcacagttcattgccatgttcat |
26740591 |
T |
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| Q |
515 |
tgaatcgtgattccagtgaaaaatcgatgtttgtctcttcttgctctcaccaaccttgttaattcccaattggttcatctc |
595 |
Q |
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| T |
26740592 |
tgaatcgtgattccagtgaaaaatcgatgtttgtctcttcttgctctcaacaaccttgttaattcccaattggttcatctc |
26740672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 26739791 - 26739973
Alignment:
| Q |
1 |
ttaaaaggatcattggatctctgccaaaccatcatgagtcatcagactttgccgtcgacctctataggaacgctagacttcgtcacgaccaccattaacc |
100 |
Q |
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| T |
26739791 |
ttaaaaggatcattggatctctgccaaaccatcatgagtcatcggactctgccgtcgacctctataggaacgctagacttcctcacaaccaccattaacc |
26739890 |
T |
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| Q |
101 |
accacaaattgtggcgtgtcaatgagtgtatcctatataatatacacctattattactcttttgtttacctcagacaaagata |
183 |
Q |
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| T |
26739891 |
accacaaatagtggtgtgtcaatgagtatatcctatataatatacacctattattactcttttgtttacctcagacaaagata |
26739973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 440 - 588
Target Start/End: Original strand, 26738939 - 26739088
Alignment:
| Q |
440 |
gaatatctatagtcaaattgcattgcatacattcaaatctcgcagtatttttgcacagttcattgccatgttcattgaatcgtgattccagtgaaaaatc |
539 |
Q |
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| T |
26738939 |
gaatatttattgtcaaattgcattgcatacattcaaatcctgcagtatttttgcatagttcattgccatgttcatggaatcgtgattccagggaaaaatc |
26739038 |
T |
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| Q |
540 |
gatgtttgtctcttc-ttgctctcaccaaccttgttaattcccaattggt |
588 |
Q |
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| T |
26739039 |
gacggctgtctcttctttgctttcaccaaccttgttaactcccagttggt |
26739088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 312 - 385
Target Start/End: Original strand, 26740108 - 26740181
Alignment:
| Q |
312 |
ttatcacaaaagttgttacaactgattgtacaaatgccactactcttgtaatacgaaattaagttcttataaaa |
385 |
Q |
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| T |
26740108 |
ttattacaaaagttgttacaactgattgtacaaatgccactactcttgtaataccaaattaagttcttataaaa |
26740181 |
T |
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