View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386_low_9 (Length: 574)
Name: NF11386_low_9
Description: NF11386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 9 - 555
Target Start/End: Complemental strand, 51558359 - 51557813
Alignment:
| Q |
9 |
gacatcaacaaacacagttgttacctttatcaccacactcaaacttcttacaatcaataaccatgcacctgaaccataattatgttaccttagagctaag |
108 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51558359 |
gacatcaccaaacacagttgttacctttatcaccacactcaaacttcttacaatcaataaccatgcacctgaaccataattatgttaccttagagctaag |
51558260 |
T |
|
| Q |
109 |
atgaagataaaccatgacagagaggggaaagaggatctcatctagatcattctaacttagctacacaatcaaccctgtaacaaactatcgttatcacaaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
51558259 |
atgaagataaaccatgacagagaggggaaagaggatctcatctagatcattctaacttagctacacaatcaaccctgcaacaaactatcgttatcacaaa |
51558160 |
T |
|
| Q |
209 |
atgcaaagagactgccaaaactcaacattattgcagaattagacactagatacttgcaaatcatcttttacaattacaactagcnnnnnnnnnnnnnnnn |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51558159 |
atgcaaagagactgccaaaactcaacattattgcagaattagacactagatacttgcaaatcatcttttacaattacaactagcaaaaggaaaaaatcaa |
51558060 |
T |
|
| Q |
309 |
nnnnnnnnnttatatcattcaatgtttcagacaatgctaaaattggtcagtctttaacatccgaaaccccttcgcctaaaatctgaaaccttgcttcggc |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51558059 |
acaaaaaaattatatcattcaatgtttcagacaatgctaaaattgttcagtctttaacatccgaaaccccttcgcctaaaatctgaaaccttgcttcggc |
51557960 |
T |
|
| Q |
409 |
ttcagccaaacaaggagaactaatcactttacagattcgctcttcccctcttcctttcctgagagctaaccttgtcgtggttgcatgagccataatgttt |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51557959 |
ttcagccaaacaaggagaactaatcactttacagattctctcttcccctcttcctttcctgagagctaaccttgtcgtggttgcatgagccataatgttt |
51557860 |
T |
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| Q |
509 |
ccaccaattggcttgatttggggtccagcaaacattgcagaaccgtc |
555 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51557859 |
ccaccaattggcttgatttggggtccagcaaacattgcagaaccgtc |
51557813 |
T |
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