View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11387_high_2 (Length: 526)
Name: NF11387_high_2
Description: NF11387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11387_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 15 - 508
Target Start/End: Complemental strand, 31850835 - 31850341
Alignment:
| Q |
15 |
cagagacttcaaagttgaaaccatgtggagcactataatgaacaggaaaagtgttggcaaaaatttgagctgaagaaccaaatgttttggaggcacgcca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31850835 |
cagagacttcaaagttgaaaccatgtggagcactataatgaacaggaaaagtgttggcaaaaatttgagctgaagaaccaaatgttttggagccacgcca |
31850736 |
T |
|
| Q |
115 |
aataacttcaagtgatttatcactttttcgcttagctctgtcttgataatcaattctagcaaagtgtacagaatcaaatccaagctgcaaaggtaaataa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31850735 |
aataacttcaagtgatttatcactttttcgcttagctctgtcttgataatcaattctagcaaagtgtacagaatcaaatccaagctgcaaaggtaaataa |
31850636 |
T |
|
| Q |
215 |
aatgagagtattcaattttactatgttttactaaagagtaaagatcacaaaaaatatttaaccaaccactttctaatacattcattctaagacacagtat |
314 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31850635 |
aatgagtgtattcaattttactatgttttactaaagagtaaagatcacaaaaaatatttaaccaaccactttctaatacattcattctaagacacagtat |
31850536 |
T |
|
| Q |
315 |
tgtgttgattcaaattcacat-aatcttccaaaactatatgagattcatatgatttagtattgtgtttaaattaaaagttgatatagcaatcttgaaatc |
413 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31850535 |
tgtgttgattcaaattcacatgaatcttccaaaactatatgagattcatatgatttagtattgtgttcaaattaaaagttgatatagcaatcttgaaatc |
31850436 |
T |
|
| Q |
414 |
acatacaaattcatttgacaaaaatggatattaattgattaactattataatagttttaacacaattcctaccttttcaaaataatttggacccc |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31850435 |
acatacaaattcatttgacaaaaatggatattaattgattaactattataatagttttaacacaattcctaccttttcaaaataatttggacccc |
31850341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University