View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11387_high_3 (Length: 363)

Name: NF11387_high_3
Description: NF11387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11387_high_3
NF11387_high_3
[»] chr5 (14 HSPs)
chr5 (1-363)||(41558713-41559075)
chr5 (40-204)||(41542727-41542895)
chr5 (297-363)||(13287429-13287495)
chr5 (299-363)||(6770508-6770572)
chr5 (299-358)||(19820429-19820488)
chr5 (297-363)||(19579664-19579730)
chr5 (297-363)||(41995434-41995500)
chr5 (297-363)||(42469184-42469250)
chr5 (314-363)||(7175049-7175098)
chr5 (315-363)||(31264421-31264467)
chr5 (302-363)||(36642792-36642853)
chr5 (297-357)||(15382440-15382500)
chr5 (323-363)||(16199315-16199354)
chr5 (299-351)||(22013379-22013431)
[»] scaffold0007 (1 HSPs)
scaffold0007 (297-363)||(225298-225364)
[»] chr3 (9 HSPs)
chr3 (297-363)||(24205071-24205137)
chr3 (299-363)||(55401040-55401104)
chr3 (297-352)||(10335327-10335382)
chr3 (297-361)||(26665099-26665163)
chr3 (297-363)||(3164055-3164121)
chr3 (320-357)||(2608425-2608462)
chr3 (297-358)||(15796329-15796390)
chr3 (297-352)||(750659-750715)
chr3 (320-360)||(35335587-35335627)
[»] chr6 (15 HSPs)
chr6 (299-363)||(33303624-33303688)
chr6 (297-358)||(8777008-8777069)
chr6 (298-363)||(34595098-34595163)
chr6 (297-360)||(6389706-6389769)
chr6 (297-360)||(7625085-7625148)
chr6 (316-363)||(10760871-10760918)
chr6 (297-363)||(426544-426610)
chr6 (297-363)||(16766660-16766726)
chr6 (323-360)||(7250996-7251033)
chr6 (297-358)||(7938079-7938140)
chr6 (299-352)||(8365560-8365613)
chr6 (297-358)||(9107405-9107466)
chr6 (306-363)||(20518317-20518374)
chr6 (299-363)||(853889-853953)
chr6 (299-363)||(1334626-1334690)
[»] chr7 (7 HSPs)
chr7 (297-363)||(11061106-11061172)
chr7 (298-363)||(43249957-43250022)
chr7 (299-363)||(27945006-27945070)
chr7 (297-363)||(5409866-5409932)
chr7 (297-331)||(9778471-9778505)
chr7 (297-358)||(598171-598232)
chr7 (323-363)||(927867-927907)
[»] scaffold0306 (1 HSPs)
scaffold0306 (299-363)||(13365-13429)
[»] scaffold0152 (1 HSPs)
scaffold0152 (299-363)||(21898-21962)
[»] chr4 (8 HSPs)
chr4 (299-363)||(12895304-12895368)
chr4 (314-363)||(34589736-34589785)
chr4 (297-363)||(23293016-23293082)
chr4 (297-363)||(24343470-24343536)
chr4 (297-363)||(27706207-27706273)
chr4 (320-360)||(7367539-7367579)
chr4 (320-360)||(48557611-48557651)
chr4 (320-363)||(48845126-48845170)
[»] chr2 (9 HSPs)
chr2 (297-360)||(23354685-23354748)
chr2 (312-358)||(12940970-12941016)
chr2 (297-358)||(15972836-15972897)
chr2 (299-358)||(20539709-20539768)
chr2 (297-352)||(36756385-36756440)
chr2 (299-357)||(19536434-19536492)
chr2 (299-360)||(23355028-23355089)
chr2 (302-350)||(18421931-18421979)
chr2 (307-363)||(18841043-18841099)
[»] chr1 (9 HSPs)
chr1 (297-363)||(1486739-1486805)
chr1 (293-363)||(22794108-22794178)
chr1 (299-352)||(48040503-48040556)
chr1 (312-363)||(7779591-7779641)
chr1 (297-363)||(34298399-34298465)
chr1 (314-363)||(16812523-16812572)
chr1 (302-363)||(20157380-20157441)
chr1 (297-358)||(40917714-40917775)
chr1 (299-363)||(10572619-10572683)
[»] scaffold0053 (1 HSPs)
scaffold0053 (297-358)||(8761-8822)
[»] chr8 (8 HSPs)
chr8 (326-363)||(34201076-34201113)
chr8 (320-359)||(11815815-11815854)
chr8 (297-363)||(22651939-22652005)
chr8 (297-363)||(44067479-44067545)
chr8 (297-330)||(926851-926884)
chr8 (320-361)||(14943129-14943170)
chr8 (299-352)||(28642373-28642426)
chr8 (301-358)||(29510339-29510396)
[»] scaffold0018 (1 HSPs)
scaffold0018 (302-358)||(178854-178910)
[»] scaffold0168 (1 HSPs)
scaffold0168 (297-363)||(21006-21072)
[»] scaffold0003 (1 HSPs)
scaffold0003 (298-351)||(241558-241611)
[»] scaffold0223 (1 HSPs)
scaffold0223 (299-363)||(20137-20201)
[»] scaffold0008 (1 HSPs)
scaffold0008 (297-329)||(263436-263468)


Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 41559075 - 41558713
Alignment:
Q  1 atacacgaaaaagaagtcagtatatgtcaagggtggggagatagacctttaccctacaaataaatattttaagaattagcaatatagcagtcatgatact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41559075 atacacgaaaaagaagtcagtatatgtcaagggtggggagatagacctttaccctacaaataaatattttaagaattagcaatatagcagtcatgatact 41558976  T
Q  101 agcatttaaacaatctcatctataagattgacgcaaactaaacctgagtacaatgaagaatcttagtaagtttatacaaaggcttatgaataattcttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41558975 agcatttaaacaatctcatctataagattgacgcaaactaaacctgagtacaatgaagaatcttagtaagtttatacaaaggcttatgaataattcttta 41558876  T
Q  201 ttaaaaagtgaatgaattgaattttatcacacacgtcaatgtccaacaccgacatttgccagacacaacttctatcagaagccatgaagcacaaacacac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41558875 ttaaaaagtgaatgaattgaattttatcacacacgtcaatgtccaacaccgacatttgccagacacaacttctatcagaagccatgaagcacaaacacac 41558776  T
Q  301 ggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41558775 ggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 41558713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 204
Target Start/End: Complemental strand, 41542895 - 41542727
Alignment:
Q  40 gatagacctttaccctacaaataaatattttaagaattagcaatatagcag-tcatgatactagcatttaaacaatctca--tctataagattgacgcaa 136  Q
    |||| ||| |||||||||||| |||| ||| ||||||||| || ||| ||| ||| |  || ||| |||||||| |||||  ||||||||||||   |||    
T  41542895 gataaaccattaccctacaaacaaatctttcaagaattagtaa-atatcagatcagggcaccagcttttaaacagtctcacatctataagattgtgacaa 41542797  T
Q  137 actaaacctgagtacaatgaagaatcttagtaagtttat--acaaaggcttatgaataattctttattaa 204  Q
    |||||||| ||||||||||||||||||||||||| || |   ||||||||| ||||||||||| ||||||    
T  41542796 actaaaccagagtacaatgaagaatcttagtaagattctgaccaaaggcttctgaataattctctattaa 41542727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 13287495 - 13287429
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||||||||| |||||||||||||| |||| | |||||| |||||||||||| ||||| ||||    
T  13287495 acacggacaccggacacgacacggacactaacacgtcgacacagataataatttgaaaaaatcacat 13287429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 6770508 - 6770572
Alignment:
Q  299 acggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||||| | | |||||||||||||||||| |||||||| ||||||||| ||||||| ||||    
T  6770508 acggacaccgaacatgacacggacactgacacactgacacaactaataatttaagaaaatcacat 6770572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 19820488 - 19820429
Alignment:
Q  299 acggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaat 358  Q
    |||||||||||| |||||||||||||||||||   |||||   |||||||||||||||||    
T  19820488 acggacaccggacacgacacggacactgacactccgacaccgctaataatttgagaaaat 19820429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 19579664 - 19579730
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||| |||||||||||| ||||||||||||| ||   ||||||  ||||||||||||||||| ||||    
T  19579664 acaccgacaccggatacaacacggacactgatacgccgacacagctaataatttgagaaaatcacat 19579730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 41995434 - 41995500
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||||| ||||||||||| |||||||||||   ||||||| |||||||| || ||||| ||||    
T  41995434 acacggacactggatacgacacagacactgacacgccgacacaactaataattcgaaaaaatcacat 41995500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 42469184 - 42469250
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||||||| | |||||||||| | ||||||   |||||  |||||||||||||||||||||||    
T  42469184 acacggacaccgaacacgacacggataatgacacgccgacacggataataatttgagaaaatgacat 42469250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 7175098 - 7175049
Alignment:
Q  314 gacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||||||||||||| |||||   ||||||||||||||||| ||||    
T  7175098 gacacggacactgacacatcgacaccgttaataatttgagaaaatcacat 7175049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 31264421 - 31264467
Alignment:
Q  315 acacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||||  |||||| ||||||| ||||||||||||||||||||||    
T  31264421 acacggacac--acacatcgacacaagtaataatttgagaaaatgacat 31264467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 363
Target Start/End: Complemental strand, 36642853 - 36642792
Alignment:
Q  302 gacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||| |||||||||||||||||||   ||||||  ||||||||||| ||| ||||||    
T  36642853 gacaccggacacgacacggacactgacacgccgacacagttaataatttgaaaaagtgacat 36642792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 15382440 - 15382500
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaa 357  Q
    |||||||||||||| |||||||||||| ||||||   ||||||  ||||||||||| ||||    
T  15382440 acacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaa 15382500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 16199354 - 16199315
Alignment:
Q  323 actgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  16199354 actgacacatt-acacaaataataatttgacaaaatgacat 16199315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 22013379 - 22013431
Alignment:
Q  299 acggacaccggatacgacacggacactgacacattgacacaaataataatttg 351  Q
    |||||||||||| |||||||||||||||||||   ||||||  ||||||||||    
T  22013379 acggacaccggacacgacacggacactgacacgccgacacagctaataatttg 22013431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 225364 - 225298
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||||||||| |||||||||||||||||||   |||||| |||||||||||||||||||||||    
T  225364 acacggacaccggacacgacacggacactgacacgccgacacagataataatttgagaaaatgacat 225298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 24205137 - 24205071
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||||||||| |||||||||||||||||||   |||||  |||||||||||||||||||||||    
T  24205137 acacggacaccggacacgacacggacactgacacgccgacacggataataatttgagaaaatgacat 24205071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 55401040 - 55401104
Alignment:
Q  299 acggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||||||||||||||||||||||| ||   ||||||| ||||||||||| ||||| ||||    
T  55401040 acggacaccggatacgacacggacactgatacgccgacacaactaataatttgaaaaaatcacat 55401104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 10335382 - 10335327
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttga 352  Q
    |||||||||||||| |||||||||||||||||||   ||||||| |||||||||||    
T  10335382 acacggacaccggacacgacacggacactgacacgccgacacaactaataatttga 10335327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 26665099 - 26665163
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgac 361  Q
    ||||||||| ||||||| |||| ||||| || | |  ||||||||||||||||||||||||||||    
T  26665099 acacggacatcggatacaacacagacaccgataaaccgacacaaataataatttgagaaaatgac 26665163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 3164121 - 3164055
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||||||||| |||||||||||| || ||| | ||||||  ||||||||||| ||||| ||||    
T  3164121 acacggacaccggacacgacacggacaatggcacgtcgacacagctaataatttgaaaaaatcacat 3164055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 2608425 - 2608462
Alignment:
Q  320 gacactgacacattgacacaaataataatttgagaaaa 357  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  2608425 gacactgacacattgacactaataatattttgagaaaa 2608462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 15796390 - 15796329
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaat 358  Q
    |||||||||||||| |||||||||||| ||||||   ||||||  ||||||||||| |||||    
T  15796390 acacggacaccggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaat 15796329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 750715 - 750659
Alignment:
Q  297 acacggacaccggatacgacacggacac-tgacacattgacacaaataataatttga 352  Q
    |||||||||||||| ||||||||||||| ||||||   ||||||| |||||||||||    
T  750715 acacggacaccggacacgacacggacacttgacacggcgacacaactaataatttga 750659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 35335587 - 35335627
Alignment:
Q  320 gacactgacacattgacacaaataataatttgagaaaatga 360  Q
    ||||||||||||| ||||| | |||||||||||||||||||    
T  35335587 gacactgacacatagacactagtaataatttgagaaaatga 35335627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 33303624 - 33303688
Alignment:
Q  299 acggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||| || |||| |||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  33303624 acggacaccagacacgatacggacactgacacatcgacactaataataatttgaaaaaatgacat 33303688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 8777069 - 8777008
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaat 358  Q
    ||||||||| |||| |||||||||||||||||||   ||||||| ||||||||||| |||||    
T  8777069 acacggacaacggacacgacacggacactgacacgccgacacaactaataatttgaaaaaat 8777008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 34595098 - 34595163
Alignment:
Q  298 cacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||||||| |||||||||||| ||||||   ||||||| ||||||||||| ||||| ||||    
T  34595098 cacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatcacat 34595163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 360
Target Start/End: Original strand, 6389706 - 6389769
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatga 360  Q
    |||| ||||||||| |||||||||||||| ||||   |||||  ||||||||||||||||||||    
T  6389706 acacagacaccggacacgacacggacactcacacgccgacacggataataatttgagaaaatga 6389769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 360
Target Start/End: Original strand, 7625085 - 7625148
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatga 360  Q
    ||||||||| |||| ||||||| ||||| ||||| | |||||  ||||||||||||||||||||    
T  7625085 acacggacatcggacacgacacagacaccgacacgtcgacacggataataatttgagaaaatga 7625148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 10760918 - 10760871
Alignment:
Q  316 cacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||||||||| | |||||  |||||||||||||||||||||||    
T  10760918 cacggacactgacacgtcgacactgataataatttgagaaaatgacat 10760871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 426610 - 426544
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||| |||||| |||||||||||||||||||   ||||||  ||||||||||| ||||| ||||    
T  426610 acacggataccggacacgacacggacactgacacgccgacacagttaataatttgaaaaaatcacat 426544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 16766660 - 16766726
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||||||||| |||||| ||||||||||||   ||||||  ||||||||||| ||||| ||||    
T  16766660 acacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacat 16766726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 7251033 - 7250996
Alignment:
Q  323 actgacacattgacacaaataataatttgagaaaatga 360  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  7251033 actgacacgttgacaccaataataatttgagaaaatga 7250996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 7938079 - 7938140
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaat 358  Q
    |||||||||||||| |||||| ||||||||||||   ||||||  ||||||||||| |||||    
T  7938079 acacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaat 7938140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 8365613 - 8365560
Alignment:
Q  299 acggacaccggatacgacacggacactgacacattgacacaaataataatttga 352  Q
    ||||||||| || |||||||||||||||||||   ||||||| |||||||||||    
T  8365613 acggacaccagacacgacacggacactgacacgccgacacaactaataatttga 8365560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 9107466 - 9107405
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaat 358  Q
    |||||||||||||| |||||||||||||| ||||   ||||||  ||||||||||| |||||    
T  9107466 acacggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaat 9107405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 20518317 - 20518374
Alignment:
Q  306 ccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||||||| |||||||||||| | |||| | ||| ||||||||||||| ||||    
T  20518317 ccggatacgacacagacactgacacactaacaccactaacaatttgagaaaattacat 20518374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 853953 - 853889
Alignment:
Q  299 acggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||||||| ||||||||||  |||||||   ||||||| ||||||||||| ||||| ||||    
T  853953 acggacaccggacacgacacggatgctgacacgccgacacaactaataatttgaaaaaatcacat 853889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 1334626 - 1334690
Alignment:
Q  299 acggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||||||| ||||||| ||||| |||||||||||||  |||| | ||||| |||| |||||    
T  1334626 acggacaccggacacgacactgacacagacacattgacacggataaaattttgaaaaaaggacat 1334690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 11061172 - 11061106
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||| |||||||||||||||||||||||||  ||||||  ||||||||||| ||||| ||||    
T  11061172 acacggacatcggatacgacacggacactgacacaccgacacagctaataatttgaaaaaatcacat 11061106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 43249957 - 43250022
Alignment:
Q  298 cacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||||||| | |||||||||||||||||   |||||  |||||||||||||||||||||||    
T  43249957 cacggacaccggacaagacacggacactgacacgccgacacggataataatttgagaaaatgacat 43250022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 27945006 - 27945070
Alignment:
Q  299 acggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||||||| |||||||||||||||||||   ||||| | ||||||||||||||||| ||||    
T  27945006 acggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaattacat 27945070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 5409932 - 5409866
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||| |||||||||||||||| ||||||||||||  ||| |||  ||||||||||| ||||| ||||    
T  5409932 acacagacaccggatacgacatggacactgacacgctgatacagctaataatttgaaaaaatcacat 5409866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 9778471 - 9778505
Alignment:
Q  297 acacggacaccggatacgacacggacactgacaca 331  Q
    |||||||||||||| ||||||||||||||||||||    
T  9778471 acacggacaccggacacgacacggacactgacaca 9778505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 598171 - 598232
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaat 358  Q
    ||||||||||| || | ||||||||||||||||||| |||||   ||||||||| |||||||    
T  598171 acacggacaccagacatgacacggacactgacacatcgacaccgctaataatttaagaaaat 598232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 927907 - 927867
Alignment:
Q  323 actgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||| | ||||| ||||||||||||||||||||||||    
T  927907 actgacacgtcgacactaataataatttgagaaaatgacat 927867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 13365 - 13429
Alignment:
Q  299 acggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||||||| | |||||||||||||||||   ||||||| ||||||||||||||||| ||||    
T  13365 acggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacat 13429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 21962 - 21898
Alignment:
Q  299 acggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||||||| | |||||||||||||||||   ||||||| ||||||||||||||||| ||||    
T  21962 acggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacat 21898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 12895368 - 12895304
Alignment:
Q  299 acggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||||||||||||||| ||| ||||||   ||||||||||||||||||| ||||| ||||    
T  12895368 acggacaccggatacgacacgaacaatgacacgccgacacaaataataatttgaaaaaatcacat 12895304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 34589785 - 34589736
Alignment:
Q  314 gacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||||| |||||||||||||  |||| ||||||||||||||||||    
T  34589785 gacacggacacggacacattgacaccgataacaatttgagaaaatgacat 34589736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 23293082 - 23293016
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||||||||| |||||||||||| ||||||   ||||||  ||||||||||| ||||| ||||    
T  23293082 acacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacat 23293016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 24343470 - 24343536
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||||||||| ||||||||||| | |||||   |||||  |||||||||||||||||| ||||    
T  24343470 acacggacaccggacacgacacggacgccgacacgccgacacggataataatttgagaaaattacat 24343536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 27706273 - 27706207
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||||| || |||||| |||||||||||| | ||||||| ||||||||| | ||||| ||||    
T  27706273 acacggacaccagacacgacagggacactgacacgtcgacacaattaataatttaaaaaaatcacat 27706207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 7367539 - 7367579
Alignment:
Q  320 gacactgacacattgacacaaataataatttgagaaaatga 360  Q
    |||||| |||||| ||||| |||||||||||||||||||||    
T  7367539 gacactaacacatagacaccaataataatttgagaaaatga 7367579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 48557611 - 48557651
Alignment:
Q  320 gacactgacacattgacacaaataataatttgagaaaatga 360  Q
    ||||||||||||||||||| | ||| |||||||||||||||    
T  48557611 gacactgacacattgacactagtaaaaatttgagaaaatga 48557651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 363
Target Start/End: Original strand, 48845126 - 48845170
Alignment:
Q  320 gacactgacacattgacac-aaataataatttgagaaaatgacat 363  Q
    ||||||||||| | ||||| |||||||||||||||||||||||||    
T  48845126 gacactgacacttggacacgaaataataatttgagaaaatgacat 48845170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 360
Target Start/End: Complemental strand, 23354748 - 23354685
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatga 360  Q
    |||||||||||||| | ||||||||||| ||||   ||||||| ||||||||||||||||||||    
T  23354748 acacggacaccggacatgacacggacaccgacatgctgacacagataataatttgagaaaatga 23354685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 12941016 - 12940970
Alignment:
Q  312 acgacacggacactgacacattgacacaaataataatttgagaaaat 358  Q
    ||||||||||||||||||| ||||||||| ||||||||||| |||||    
T  12941016 acgacacggacactgacacgttgacacaactaataatttgaaaaaat 12940970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 15972836 - 15972897
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaat 358  Q
    |||| |||||| ||||||||||||||||||||||   ||||||| ||||||||||| |||||    
T  15972836 acacagacaccagatacgacacggacactgacacgccgacacaattaataatttgaaaaaat 15972897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 20539768 - 20539709
Alignment:
Q  299 acggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaat 358  Q
    |||||||| ||| ||||||||||||||||||| | ||||||  ||||||||||| |||||    
T  20539768 acggacactggacacgacacggacactgacacgtcgacacagctaataatttgaaaaaat 20539709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 36756440 - 36756385
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttga 352  Q
    ||||| ||| |||||||||||| ||||||||||| | ||||||| |||||||||||    
T  36756440 acacgaacatcggatacgacacagacactgacacgtcgacacaactaataatttga 36756385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 19536492 - 19536434
Alignment:
Q  299 acggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaa 357  Q
    |||||||||||| |||||||||||| ||||||   ||||||| ||||||||||| ||||    
T  19536492 acggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaa 19536434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 360
Target Start/End: Complemental strand, 23355089 - 23355028
Alignment:
Q  299 acggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatga 360  Q
    |||||||| ||| | ||||||||||| ||||   ||||||| ||||||||||||||||||||    
T  23355089 acggacacgggacatgacacggacaccgacatgctgacacagataataatttgagaaaatga 23355028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 350
Target Start/End: Original strand, 18421931 - 18421979
Alignment:
Q  302 gacaccggatacgacacggacactgacacattgacacaaataataattt 350  Q
    |||| ||||||||||||||||||||||||   ||||||| |||||||||    
T  18421931 gacatcggatacgacacggacactgacacgccgacacaattaataattt 18421979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 18841099 - 18841043
Alignment:
Q  307 cggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||| |||||| ||||||||||||  |||||||| ||||||||||| ||||| ||||    
T  18841099 cggacacgacatggacactgacacgctgacacaactaataatttgaaaaaattacat 18841043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 1486805 - 1486739
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||| ||||||||||||||||| ||||||||  |||||||  ||||||||||| ||||| ||||    
T  1486805 acacggataccggatacgacacggatactgacacgctgacacagctaataatttgaaaaaatcacat 1486739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 363
Target Start/End: Complemental strand, 22794178 - 22794108
Alignment:
Q  293 aaacacacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||||| |||||||||||||  ||||||||||| |  ||||  |||||||||||| ||||||||||    
T  22794178 aaacacacggataccggatacgacatagacactgacacgtcaacacggataataatttgaaaaaatgacat 22794108  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 48040556 - 48040503
Alignment:
Q  299 acggacaccggatacgacacggacactgacacattgacacaaataataatttga 352  Q
    |||||||||||| |||||||||||||||||||   |||||| ||||||||||||    
T  48040556 acggacaccggacacgacacggacactgacacgccgacacagataataatttga 48040503  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 363
Target Start/End: Complemental strand, 7779641 - 7779591
Alignment:
Q  312 acgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||| ||||||||||||| |||||||||||||||| | ||||||||||    
T  7779641 acgacacgaacactgacacattaacacaaataataatttta-aaaatgacat 7779591  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 34298399 - 34298465
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||| ||||| || |||||||||| |||||||||  ||||| | ||||||||||||||||| ||||    
T  34298399 acacgtacaccagacacgacacggaaactgacacaccgacaccactaataatttgagaaaatcacat 34298465  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 16812523 - 16812572
Alignment:
Q  314 gacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||||||||||||  ||||| ||||||||||||| ||||| ||||    
T  16812523 gacacggacactgacacaccgacaccaataataatttgacaaaatcacat 16812572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 363
Target Start/End: Complemental strand, 20157441 - 20157380
Alignment:
Q  302 gacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||| ||||||||| ||||||||||| |||||   ||||||| ||||||||| ||||    
T  20157441 gacaccggacacgacacgggcactgacacatcgacaccgctaataatgtgagaaaatcacat 20157380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 40917714 - 40917775
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaat 358  Q
    |||||||||||||| |||||||||| ||||||||   ||||||  ||||||||||| |||||    
T  40917714 acacggacaccggacacgacacggatactgacacgccgacacagctaataatttgaaaaaat 40917775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 10572683 - 10572619
Alignment:
Q  299 acggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||||||| |||||| | ||||||||||   ||||| | ||||||||||||||||| ||||    
T  10572683 acggacaccggacacgacatgaacactgacacgccgacaccactaataatttgagaaaatcacat 10572619  T

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Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 8761 - 8822
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaat 358  Q
    |||||||||||||| |||||||||||||||||||   ||||||  ||||||||||| |||||    
T  8761 acacggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaat 8822  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 34201113 - 34201076
Alignment:
Q  326 gacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  34201113 gacacattgacactaataataatttgagaaaatgacat 34201076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 11815815 - 11815854
Alignment:
Q  320 gacactgacacattgacacaaataataatttgagaaaatg 359  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  11815815 gacactgacacgttgacaccaataataatttgagaaaatg 11815854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 22651939 - 22652005
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||| ||||||||| |||||||||||||||||||   ||||||  ||||||||||| ||||| ||||    
T  22651939 acactgacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacat 22652005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 44067479 - 44067545
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||||| || || |||| |||||||||||   |||||  |||||||||||||||||||||||    
T  44067479 acacggacaccagacaccacaccgacactgacacgccgacacggataataatttgagaaaatgacat 44067545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 926884 - 926851
Alignment:
Q  297 acacggacaccggatacgacacggacactgacac 330  Q
    |||||||||||||| |||||||||||||||||||    
T  926884 acacggacaccggacacgacacggacactgacac 926851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 361
Target Start/End: Complemental strand, 14943170 - 14943129
Alignment:
Q  320 gacactgacacattgacacaaataataatttgagaaaatgac 361  Q
    ||||||||||||||||||| ||||| | ||||||||||||||    
T  14943170 gacactgacacattgacaccaataaaattttgagaaaatgac 14943129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 28642373 - 28642426
Alignment:
Q  299 acggacaccggatacgacacggacactgacacattgacacaaataataatttga 352  Q
    ||||||| |||| |||||||||||| ||||||||||||||   |||||||||||    
T  28642373 acggacatcggacacgacacggacaatgacacattgacacggttaataatttga 28642426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 358
Target Start/End: Complemental strand, 29510396 - 29510339
Alignment:
Q  301 ggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaat 358  Q
    |||||||||| |||||||||||||||||||   ||||||  ||||||||||| |||||    
T  29510396 ggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaat 29510339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 178910 - 178854
Alignment:
Q  302 gacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaat 358  Q
    ||||||||| |||||||||||||||||||   ||||||| ||||||||||| |||||    
T  178910 gacaccggacacgacacggacactgacacgccgacacaactaataatttgaaaaaat 178854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 21006 - 21072
Alignment:
Q  297 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    ||||||||||| || ||||||||||||||||||   ||||||   ||||||||||||||||| ||||    
T  21006 acacggacaccagacacgacacggacactgacatgctgacacggttaataatttgagaaaatcacat 21072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 241558 - 241611
Alignment:
Q  298 cacggacaccggatacgacacggacactgacacattgacacaaataataatttg 351  Q
    ||||||||||||| |||||||||||||||||||   ||||||  ||||||||||    
T  241558 cacggacaccggacacgacacggacactgacacgccgacacagctaataatttg 241611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 20137 - 20201
Alignment:
Q  299 acggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacat 363  Q
    |||||||||||| |||||||||||| ||||||   ||||||  ||||||||||| ||||| ||||    
T  20137 acggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacat 20201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 263468 - 263436
Alignment:
Q  297 acacggacaccggatacgacacggacactgaca 329  Q
    |||||||||| ||||||||||||||||||||||    
T  263468 acacggacactggatacgacacggacactgaca 263436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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