View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11387_high_5 (Length: 311)
Name: NF11387_high_5
Description: NF11387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11387_high_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 41558290 - 41558583
Alignment:
| Q |
18 |
agtttactcattgtattcatgttctctaggttttgagnnnnnnnngttattttgcttttagatgtgatgttgagagttctggtgattgttcagaagcttt |
117 |
Q |
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| T |
41558290 |
agtttactcattgtattcctgttctctaggttttgagttttttttgttattttgcttttagatgtgatgttgagagttctggtgattgttcagaagcttt |
41558389 |
T |
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| Q |
118 |
tacaagagaacaaacatagttcaaaaagagacatttattacatgcatccatctgtctttttgggtgagtcatcagaatttcgcaacatgatggatcatat |
217 |
Q |
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| T |
41558390 |
tacaagagaacaaacatagttcaaaaagagacatttattacatgcatccatctgtctttttgggtgagtcatcagaatttcgcaacatgatggatcatat |
41558489 |
T |
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| Q |
218 |
ggatactaacactcttttagtatagttgatcttgtattgattttcaatagctaattatgactgtcatgaattatctctgtagcaccgacacttc |
311 |
Q |
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| T |
41558490 |
ggatactaacactcttttagtatagttgatcttgtattgattttcaatagctaattatgactgtcatgaattatctctgtagcaccgacacttc |
41558583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 123 - 264
Target Start/End: Original strand, 41542268 - 41542409
Alignment:
| Q |
123 |
gagaacaaacatagttcaaaaagagacatttattacatgcatccatctgtctttttgggtgagtcatcagaatttcgcaacatgatggatcatatggata |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||| |
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| T |
41542268 |
gagaacaaacatagttcaaaaagagacatttattacatgcatccatctgtctttttaggcgagtagtcagaatttcgagacatgatggatcatatggata |
41542367 |
T |
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| Q |
223 |
ctaacactcttttagtatagttgatcttgtattgattttcaa |
264 |
Q |
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| T |
41542368 |
gcaatactcttttaatattgttgatcttgtattgattgtcaa |
41542409 |
T |
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