View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11387_low_1 (Length: 1345)
Name: NF11387_low_1
Description: NF11387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11387_low_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 987 - 1327
Target Start/End: Original strand, 15114077 - 15114417
Alignment:
| Q |
987 |
tctaccttaccttcatcctctttcaaactaccctcttttgaacttgttttccccttctcagacttatcgttcttgctatcttccttaacagtattcatca |
1086 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15114077 |
tctaccttaccttcatcctctttcaaactaccctcttttgaacttgttttccccttctcagacttatcgttcttgctatcttccttaacagtattcatca |
15114176 |
T |
|
| Q |
1087 |
aatgaatatacctcctcctaaactccatcgccggattatcctcaacaagcaaacccctcttatacccatctctcaaaacaacggtatacatcctattctt |
1186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15114177 |
aatgaatatacctcctcctaaactccatcgccggattatcctcaacaagcaaacccctcttatacccatctctcaaaacaacggtatacatcctattctt |
15114276 |
T |
|
| Q |
1187 |
actcgacacataaaatatccccggatgctgcaaaatcaccctcttaaacctcgatgctaaacccaaccactcaccaatcatcaaaacattatctttctcc |
1286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15114277 |
actcgacacataaaatatccccggatgctgcaaaatcaccctcttaaacctcgatgctaaacccaaccactcaccaatcatcaaaacattatctttctcc |
15114376 |
T |
|
| Q |
1287 |
gtctttttactcaccaaaagattcaaaatctcatgtaaaac |
1327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15114377 |
gtctttttactcaccaaaagattcaaaatctcatgtaaaac |
15114417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 273 - 802
Target Start/End: Original strand, 15113013 - 15113556
Alignment:
| Q |
273 |
ttgaagtcgtgtcatatttcatctgatttctatgatttctagcagccaacattctcataaaaaacaggt------gtaacaataaattgcatagaaaaac |
366 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
15113013 |
ttgaagtcgtgtcatattttgtctgatttctatgatttctagcagccaacattctcataaaaatcaggcctaaacgtaacaataaattgcatagaaaaac |
15113112 |
T |
|
| Q |
367 |
aacaa---tatgcaaaacaccaaatttataaccttaaagatgtgaaa------acaggaaaggatcaatgggaagaacaaccaacctgcacaccaattga |
457 |
Q |
| |
|
||||| || |||||||||||||||| || | |||| |||||||| ||| |||||||||||| |||||||| |||||||||||| ||||||| |
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|
| T |
15113113 |
aacaacaataagcaaaacaccaaatttttattcataaa-atgtgaaagttataacatgaaaggatcaattagaagaacagccaacctgcacatcaattga |
15113211 |
T |
|
| Q |
458 |
gaaacagatgaatcttcactaaataacggttttcttaacagttaataacccctctctgcttttactggatcttgatcgttgcggcgaactttcaacatgt |
557 |
Q |
| |
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| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| | |
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| T |
15113212 |
gtaacagatatatcttcactaaacaacggttttcttaacagttaataacccctctctgcttttagtggatcttgatcgatgcggcgaattttcaacatct |
15113311 |
T |
|
| Q |
558 |
ttatgttcacctcgcttttgcattcttttagacacttctgatgcattcatctcccatgttgaccgcgtatgcttctcaccagatctctctctgcgagaat |
657 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| || |||||||||| ||||||||||| ||||||| |
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|
| T |
15113312 |
ttatgttcacctcgcatttgcattcttttagacacttctgatgcattcttctcccacgttgaccgcataagcttctcacctgatctctctctacgagaat |
15113411 |
T |
|
| Q |
658 |
cactcgaaggcttttcagtacctaacttcatttcaacagagtttcttccccttctgttggcagaattcgattcctcaaagtttcttccccttctattgga |
757 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
15113412 |
ctctcgaaggcttttcagtacctaacttcatttccacagagtttcttccccttctgttggcagaattcgattccttaaagtttcttccccttctattagt |
15113511 |
T |
|
| Q |
758 |
agaatttgtttccaccatgtttcttccccttctattggtagaatt |
802 |
Q |
| |
|
||| |||| |||| | | ||||||||||||||||||| ||||||| |
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|
| T |
15113512 |
agagtttgattcctcaaagtttcttccccttctattgttagaatt |
15113556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 159; E-Value: 5e-84
Query Start/End: Original strand, 732 - 922
Target Start/End: Original strand, 15113822 - 15114012
Alignment:
| Q |
732 |
tcaaagtttcttccccttctattggaagaatttgtttccaccatgtttcttccccttctattggtagaattcatttcaacaaagttgtttcgtccccttc |
831 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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|
| T |
15113822 |
tcaaagtttcttccccttatattggaagaattcgtttccgccacgtttcttccccttctattggcagaattcatttcaacaaagttgtttcttccccttc |
15113921 |
T |
|
| Q |
832 |
tattggcagagcttttacgagtacccattgactcctcctgttcatcatcatcgacggtttcactagcatcctcatcttcatcatcagaaca |
922 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15113922 |
tattggcagagcttttacgagtacccatcgactcctcctcttcatcatcatcgacggtttcactagcatcctcatcttcatcatcagaaca |
15114012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 139 - 268
Target Start/End: Original strand, 15112857 - 15112986
Alignment:
| Q |
139 |
atatgagaatagtgtagttacttcgttcatctaataataactattagtaataagataaacaatagcatttcagtacgattacaacgactcaagctaaggt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||| |||||||| |||||||||||| | |
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|
| T |
15112857 |
atatgagaatagtgtagttacttcgttcatctaataataaatagtagtaataagataaacgatagcatttcagtatgattacaatgactcaagctaactt |
15112956 |
T |
|
| Q |
239 |
ttactatatttttccctcttttaatttata |
268 |
Q |
| |
|
||||||||||||||| |||||||||||||| |
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|
| T |
15112957 |
ttactatatttttccttcttttaatttata |
15112986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 697 - 802
Target Start/End: Original strand, 15113607 - 15113712
Alignment:
| Q |
697 |
agtttcttccccttctgttggcagaattcgattcctcaaagtttcttccccttctattggaagaatttgtttccaccatgtttcttccccttctattggt |
796 |
Q |
| |
|
||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |||| |||||| | |||| | | ||||||||||||||||||||| |
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|
| T |
15113607 |
agtttcttccccttctgttggtaggattagattcctcaaagtttcttccccttctgttggtagaattagattcctcgaagtttcttccccttctattggt |
15113706 |
T |
|
| Q |
797 |
agaatt |
802 |
Q |
| |
|
|||||| |
|
|
| T |
15113707 |
agaatt |
15113712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 697 - 802
Target Start/End: Original strand, 15113646 - 15113751
Alignment:
| Q |
697 |
agtttcttccccttctgttggcagaattcgattcctcaaagtttcttccccttctattggaagaatttgtttccaccatgtttcttccccttctattggt |
796 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| |||||| | |||| | | ||||||||||||||| ||||| |
|
|
| T |
15113646 |
agtttcttccccttctgttggtagaattagattcctcgaagtttcttccccttctattggtagaattagattcctcaaagtttcttccccttctgttggt |
15113745 |
T |
|
| Q |
797 |
agaatt |
802 |
Q |
| |
|
| |||| |
|
|
| T |
15113746 |
aaaatt |
15113751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 697 - 802
Target Start/End: Original strand, 15113685 - 15113790
Alignment:
| Q |
697 |
agtttcttccccttctgttggcagaattcgattcctcaaagtttcttccccttctattggaagaatttgtttccaccatgtttcttccccttctattggt |
796 |
Q |
| |
|
|||||||||||||||| |||| |||||| |||||||||||||||||||||||||| |||| | |||||| |||| | | ||||||||||||||| ||||| |
|
|
| T |
15113685 |
agtttcttccccttctattggtagaattagattcctcaaagtttcttccccttctgttggtaaaatttgattcctcaaagtttcttccccttctgttggt |
15113784 |
T |
|
| Q |
797 |
agaatt |
802 |
Q |
| |
|
|||||| |
|
|
| T |
15113785 |
agaatt |
15113790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 697 - 794
Target Start/End: Original strand, 15113724 - 15113821
Alignment:
| Q |
697 |
agtttcttccccttctgttggcagaattcgattcctcaaagtttcttccccttctattggaagaatttgtttccaccatgtttcttccccttctattg |
794 |
Q |
| |
|
||||||||||||||||||||| | |||| |||||||||||||||||||||||||| |||| |||||||| |||| | | ||||||||||||| ||||| |
|
|
| T |
15113724 |
agtttcttccccttctgttggtaaaatttgattcctcaaagtttcttccccttctgttggtagaatttgattcctcaaagtttcttccccttttattg |
15113821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 708 - 802
Target Start/End: Original strand, 15113579 - 15113673
Alignment:
| Q |
708 |
cttctgttggcagaattcgattcctcaaagtttcttccccttctattggaagaatttgtttccaccatgtttcttccccttctattggtagaatt |
802 |
Q |
| |
|
||||| |||| ||| ||||||||||||||||||||||||||||| |||| || ||| | |||| | | ||||||||||||||| ||||||||||| |
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|
| T |
15113579 |
cttctattggtagagttcgattcctcaaagtttcttccccttctgttggtaggattagattcctcaaagtttcttccccttctgttggtagaatt |
15113673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 697 - 795
Target Start/End: Original strand, 15113826 - 15113927
Alignment:
| Q |
697 |
agtttcttccccttctgttggcagaattcgattcctcaaagtttcttccccttctattggaagaatttgtttccacca---tgtttcttccccttctatt |
793 |
Q |
| |
|
|||||||||||||| | |||| |||||||| |||| | | |||||||||||||||||||| |||||| |||| || | ||||||||||||||||||| |
|
|
| T |
15113826 |
agtttcttccccttatattggaagaattcgtttccgccacgtttcttccccttctattggcagaattcatttcaacaaagttgtttcttccccttctatt |
15113925 |
T |
|
| Q |
794 |
gg |
795 |
Q |
| |
|
|| |
|
|
| T |
15113926 |
gg |
15113927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 697 - 798
Target Start/End: Original strand, 15113529 - 15113630
Alignment:
| Q |
697 |
agtttcttccccttctgttggcagaattcgattcctcaaagtttcttccccttctattggaagaatttgtttccaccatgtttcttccccttctattggt |
796 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||||||| ||||| | |||||||||| ||| || | |||| | | ||||||||||||||| ||||| |
|
|
| T |
15113529 |
agtttcttccccttctattgttagaattggattcctcaaaatttctatctcttctattggtagagttcgattcctcaaagtttcttccccttctgttggt |
15113628 |
T |
|
| Q |
797 |
ag |
798 |
Q |
| |
|
|| |
|
|
| T |
15113629 |
ag |
15113630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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