View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11387_low_4 (Length: 332)
Name: NF11387_low_4
Description: NF11387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11387_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 54498147 - 54498452
Alignment:
| Q |
19 |
agtagtgtcgtccctttgctgcaatcaaagtatcttgataactcataaaactactgttaaagattgcagatttgtctccgtagaaagcagctgacaatgc |
118 |
Q |
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| T |
54498147 |
agtagtgtcgtccctttgctgcaaacaaagtatcttgataactcataaaactactgttaaagattgcagatttgtctccgtagaaagcagctgacaatgc |
54498246 |
T |
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| Q |
119 |
ctgttcgatatcatctgaacccccttccaaattatatgagttctgcaatcatacaataatc----tgttatattaactaaatacaaatatgggagagata |
214 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
54498247 |
ctgttcgatatcatctgaacctccttccaaattatatgagttctgcaatcatacaataattaatgtgttatattaactaaatacaaatatgggagagata |
54498346 |
T |
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| Q |
215 |
tc-nnnnnnnnnttgtattgatttttcttgattttaccttgaaagtaatgtcactcacaatcacattagttgcgaatgaactgaatgtagatccccaatc |
313 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54498347 |
tcaaaaaaaaaattgtattgatttttcttgattttaccttgaaagtaatgtcactcacaatcacattagttgcgaatgaactgaatgtagatccccaatc |
54498446 |
T |
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| Q |
314 |
tgatgt |
319 |
Q |
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|||||| |
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| T |
54498447 |
tgatgt |
54498452 |
T |
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