View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11387_low_5 (Length: 314)
Name: NF11387_low_5
Description: NF11387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11387_low_5 |
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| [»] scaffold0989 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 45 - 304
Target Start/End: Complemental strand, 11577471 - 11577208
Alignment:
| Q |
45 |
tcataaatagattaagaatcttaagtatgcaaggattcaaacttacctcatagattttggaaaagtatgtactttaccttttgttctatgtcgaatgagg |
144 |
Q |
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| T |
11577471 |
tcataaatagcttaagaatcttaagtatgcaaggattcaaacttatctcatagattttggaaaagtatgttctttactttttattctatgtcgaatgagg |
11577372 |
T |
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| Q |
145 |
tttaaaactactctcaagcctccttagtggatgttgcatttgaaatcctctcaaactcatcttctttcaatgttgg----ttgggaatgcagttttcttg |
240 |
Q |
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| T |
11577371 |
tttaaaaatactctcaagcctcctcagtggatgttgcatttgaaatcctctcaaactcgtcttctttcaatgttggtagattgggaatgcagttttcttg |
11577272 |
T |
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| Q |
241 |
tctctctttcttgaatccttcaaaacttctctttgtgcttgagctagaaaatcctcttcctttg |
304 |
Q |
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| T |
11577271 |
tctctctttcttgaatccttcaaaatttctctttgtgcttgagttagaaaatcctcttcctttg |
11577208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0989 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0989
Description:
Target: scaffold0989; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 280
Target Start/End: Original strand, 737 - 881
Alignment:
| Q |
141 |
gaggtttaaaactactctcaagcctccttagtggatgttgcatttgaaatcctctcaaactcatcttctttcaatg-ttggttg----ggaatgcagttt |
235 |
Q |
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| T |
737 |
gaggttttaagcttctcccatgcctccttagcggatgttgcatttgaaattttctcgaactcatcttcatccaatgcttggtagatgaggaagagagcct |
836 |
T |
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| Q |
236 |
tcttgtctctctttcttgaatccttcaaaacttctctttgtgctt |
280 |
Q |
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| T |
837 |
ttttgtctctctttcttgaatccttcaaagtgtctctttgtgctt |
881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 12765689 - 12765640
Alignment:
| Q |
234 |
tttcttgtctctctttcttgaatccttcaaaacttctctttgtgcttgag |
283 |
Q |
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| T |
12765689 |
tttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgag |
12765640 |
T |
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