View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11387_low_8 (Length: 263)
Name: NF11387_low_8
Description: NF11387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11387_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 7472813 - 7473051
Alignment:
| Q |
17 |
acttgtcttacgtaggccgttgaggaatgtgaaataactacagggcatatgtgcgcttcagatgattgtgtcgtctctacatgtctgagcacaaccatgg |
116 |
Q |
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| T |
7472813 |
acttgtcttacgtaggccgttgaggaatgtgaaataactacagggcatatgtgcgcttcagatgattgtgtcgtctctacatgtctgagcacaaccatgg |
7472912 |
T |
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| Q |
117 |
agaggaacactatagaggagaggagattccgggctcttcacaatagatctgttggaatcacagacgagattggtaatttttgtctctctttctcatgtag |
216 |
Q |
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| T |
7472913 |
agaggaacactatagaggagaggagattccgggctcttcacaatagatctgttggaatcacagacgagattggtaatttttgtctctctttctcatgtag |
7473012 |
T |
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| Q |
217 |
gtattgttatggttaaatttgaatatagatacctttgct |
255 |
Q |
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| T |
7473013 |
gtattgttatgtttaaatttgaatatagatacctttgct |
7473051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 29598474 - 29598634
Alignment:
| Q |
30 |
aggccgttgaggaatgtgaaataactacagggcatatgtgcgcttcagatgattgtgtcgtctctacatgtctgagcacaaccatggagaggaacactat |
129 |
Q |
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| T |
29598474 |
aggccgtcgaggaatgtgatacaactagagggaatatgtgcacatcagctgaatttgtcatctctacatgtctgagcacaaccatg--gaggaacactac |
29598571 |
T |
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| Q |
130 |
agaggagaggagattccgggctcttcacaatagatctgttggaatcacagacgagattggtaa |
192 |
Q |
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| T |
29598572 |
aaaggagagaagattcccgcttccgcacaatagatccgttgcaatcgcagaggagattggtaa |
29598634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 20451751 - 20451660
Alignment:
| Q |
165 |
ctgttggaatcacagacgagattggtaatttttgtctctctttctcatgtaggtattgttatggttaaatttgaatatagatacctttgctt |
256 |
Q |
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| T |
20451751 |
ctgttggaatcgcagaggagattggcaagctttgtctctttttcacatgtaagtactattatggttaaatttgaatataggtacctctgctt |
20451660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 20451798 - 20451752
Alignment:
| Q |
90 |
tctctacatgtctgagcacaaccatggagaggaacactatagaggag |
136 |
Q |
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| T |
20451798 |
tctctacatgtctgagaacaaccatggagaggaacactacagaggag |
20451752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 256
Target Start/End: Complemental strand, 5368038 - 5367958
Alignment:
| Q |
176 |
acagacgagattggtaatttttgtctctctttctcatgtaggtattgttatggttaaatttgaatatagatacctttgctt |
256 |
Q |
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| T |
5368038 |
acagaggagattggcaagctttgtctctctttcacatgtaagtactattatggttaaatttgaatataggtacctctgctt |
5367958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 5368076 - 5368029
Alignment:
| Q |
90 |
tctctacatgtctgagcacaaccatggagaggaacactatagaggaga |
137 |
Q |
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| T |
5368076 |
tctctacatgtctgagaacaaccatcgagaggaacactacagaggaga |
5368029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 18924972 - 18924933
Alignment:
| Q |
84 |
gtgtcgtctctacatgtctgagcacaaccatggagaggaa |
123 |
Q |
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| T |
18924972 |
gtgtcatctctacatatctgagcacaaccatggagaggaa |
18924933 |
T |
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