View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11388_high_1 (Length: 307)

Name: NF11388_high_1
Description: NF11388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11388_high_1
NF11388_high_1
[»] chr2 (1 HSPs)
chr2 (1-296)||(43797522-43797805)


Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 43797805 - 43797522
Alignment:
Q  1 cagaaacggtgaactcgccgtgtacttcaccgagcaagaatcggaggtcatccccgttatcattactaagcaagcagcataacagtgatacacgaccatc 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  43797805 cagaaacggtgaactcgccgtgtacttcactgagcaagaatcggaggccatccccgttatcattactaagca----gcataacagtgatacacgaccatc 43797710  T
Q  101 gttctacatatatacaatgcattgcacaatatactctattgttttgaaagnnnnnnn-ctagttggtttccaatattgatacatgccaaatgacattata 199  Q
    ||||||||||    ||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||       
T  43797709 gttctacata----caatgcattgcacaatatactctattgttttgaaagaaaaaaaactagttggtttccaatattgatacatgccaaatgacatt--- 43797617  T
Q  200 tttttcctttattattttgatgaatctggccttctcctttcttgttgttcctatttttgtaaggatatcaaacaacaataataattccctcctctct 296  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43797616 --tttcctttattattttgatgaatctggccttctcctttcttgttgttcctatttttgtaaggatatcaaacaacaataataattccctcctctct 43797522  T

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