View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11388_low_2 (Length: 311)
Name: NF11388_low_2
Description: NF11388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11388_low_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 47116780 - 47117086
Alignment:
| Q |
1 |
caagcttcctcatacccttgttatttcatttccttatgatatctcnnnnnnnctgacattgttttgtttcatcgcttctcaggtaattacaatagttata |
100 |
Q |
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| T |
47116780 |
caagcttcctcatacccttgttatttcatttccttatgatatctctttttttctgacattgttttgtttcatcgcttctcaggtaattacaatagttata |
47116879 |
T |
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| Q |
101 |
ttttatcaaagatattcaataaccaatttcttttatatctttagtttcaattcaaggagataaatattcataccttttaacgatcaaatcacaaagcaag |
200 |
Q |
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| T |
47116880 |
ttttatcaaagatattcaataaccaatttcttttatatctttagtttcaattcaaggagataaatattcataccttttaacgatcaaatcacaaagcaag |
47116979 |
T |
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| Q |
201 |
gtaagcaatatcaacgtatcaatgactcgatcgatcaccttttaacgattatttttaatttcttgttttgtagatggataggcggagaatgtatgatagg |
300 |
Q |
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| T |
47116980 |
gtaagcaatatcaacgtatcaatgac----tcgatcaccttttaacgattatttttaatttcttgttttgtagatggataggcggagaatgtatgatagg |
47117075 |
T |
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| Q |
301 |
caacaaagctc |
311 |
Q |
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||||||||||| |
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| T |
47117076 |
caacaaagctc |
47117086 |
T |
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