View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11388_low_4 (Length: 297)
Name: NF11388_low_4
Description: NF11388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11388_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 39836116 - 39835845
Alignment:
| Q |
18 |
attacaaggatggtaagtgataaacctgtggtgatattcagcaagagcacatgttgtttgagccactccattatgacattgatacgaagctttggtgcaa |
117 |
Q |
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| T |
39836116 |
attacaaggatggtaagtgataaacctgtggtgatattcagcaagagcacatgttgtttgagccactccattatgacattgatacgaagctttggtgcaa |
39836017 |
T |
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| Q |
118 |
acccaattgtttatgagcttgatgagataacaaatgggacacagattgaaagagcactgattcagctaaggtaccaaccaagtgtaccagctgtgtttat |
217 |
Q |
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| T |
39836016 |
acccaattgtttatgagcttgatgagataacaaatgggacacagattgaaagagcactgattcagctaaggtaccaaccaagtgtaccagctgtgtttat |
39835917 |
T |
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| Q |
218 |
tggccaacaattcattggtggctctaaaagaatcatgacccttcatcttcggaatgagttagtacctatgct |
289 |
Q |
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| T |
39835916 |
tggccaacaattcattggtggctctaaaagaatcatgacccttcatcttcggaatgagttagtacctatgct |
39835845 |
T |
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Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 45 - 263
Target Start/End: Original strand, 44028145 - 44028363
Alignment:
| Q |
45 |
gtggtgatattcagcaagagcacatgttgtttgagccactccattatgacattgatacgaagctttggtgcaaacccaattgtttatgagcttgatgaga |
144 |
Q |
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| T |
44028145 |
gtggtgatattcagcaagagcacatgttgcttgagccactcagtgacatcactgatacgtagctttggagctaacccaattgtttatgagcttgataaaa |
44028244 |
T |
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| Q |
145 |
taacaaatgggacacagattgaaagagcactgattcagctaaggtaccaaccaagtgtaccagctgtgtttattggccaacaattcattggtggctctaa |
244 |
Q |
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| T |
44028245 |
tcacaaatgggtcacagattgagagtgagttgcttcaaatggggtgcaaaccaagtgtacctgctgttttcataggacaacaattcagaggtggttccaa |
44028344 |
T |
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| Q |
245 |
aagaatcatgacccttcat |
263 |
Q |
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| T |
44028345 |
aaaaatcatgagccttcat |
44028363 |
T |
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