View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_high_12 (Length: 441)
Name: NF11389_high_12
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 6422592 - 6422186
Alignment:
| Q |
18 |
gtttgtatcttgtacttgtagtgtgatgatggacttgctatatcaaatgcagacttcatattctgagaaaatgcatctatggtattaaaaatcattataa |
117 |
Q |
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| T |
6422592 |
gtttgtatcttgtacttgtagtgtgatgatggacttgctatatcaaatgcagacttcatattttgagaaaatgcatctatggtatgaaaaaacattataa |
6422493 |
T |
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| Q |
118 |
tgttggaaaagtaatagatcataataatgttatttcagtagcaactgttttctactatatatagagtttaagaaatatacatcaattcataaggcaaaaa |
217 |
Q |
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| T |
6422492 |
tgttggaaaagtaatagatcataataatgttatttcagtagcaactgttttctactatatatagagtttaagaaatatacatcaattcataaggcaaaaa |
6422393 |
T |
|
| Q |
218 |
ttgttgattgtttatacgaaagtgctatagtgtacataatttgttctcaagacatgttgaagaaaaaacctgagaatttgagatgggaagcaatatttct |
317 |
Q |
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| T |
6422392 |
ttgttgattgtttatacgaaagtgctatagtgtacagaatttgttctcaagacatgttgaagaaaaaacctgagaatttgagatgggaagcaatatttct |
6422293 |
T |
|
| Q |
318 |
ggacacaattcctctctctcgtattcaatccctcgccaatttaactctctgagaaccaaatataaaccctaattaacctcatttctcccaattaaatttt |
417 |
Q |
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| T |
6422292 |
ggacacaattcctctctctcatattcaatccctcgccaatttaaatctctgagcaccaaacctaaaccctaattaacctcatttctcccaattaaatttt |
6422193 |
T |
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| Q |
418 |
ggtgttc |
424 |
Q |
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| T |
6422192 |
ggtgttc |
6422186 |
T |
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