View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_high_17 (Length: 381)
Name: NF11389_high_17
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 3 - 370
Target Start/End: Original strand, 44705904 - 44706271
Alignment:
| Q |
3 |
agtatacatattagcttataagtaataatacatcttcataaatgttcatccatgtttcataactgttagacaacttttacattacatcactataacaata |
102 |
Q |
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| T |
44705904 |
agtatacatattagcttataagtaataatacatcttcataaatgttcatccatgtttcataactgttagacaacttttacattacatcactataacaata |
44706003 |
T |
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| Q |
103 |
aacaagaatcgtcctcacacaaaaaattgagatttgaatgaagactgactatattactaagcaaaactaaatcaatgcaactgtactcataatgttaagg |
202 |
Q |
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| T |
44706004 |
aacaagaatcgtcctcacacaaaaaattgagatttgaatgaagactgactatataactaagcaaaactaaatcaatgcaactgtactcataatgttaagg |
44706103 |
T |
|
| Q |
203 |
attgagatttgagaatgaactcaagtctcatataatcccaaacctactatcatcacttgatttaacaggctcttttggagaagtacttccaactgaaggt |
302 |
Q |
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| T |
44706104 |
attgagatttgagaatgaactcaagtctcatataatcccaaacctactatcatcacttgatttaacaggatcttttggagaagtatttccaactgaaggt |
44706203 |
T |
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| Q |
303 |
ttctcagagtgtatatgtgacaattcatcaactacatctttcctttcactgtaaatgatctctttctt |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44706204 |
ttctcagagtgtatatgtgacaattcatcaactacatccttcctttcactgtaaatgatctctttctt |
44706271 |
T |
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