View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_high_18 (Length: 377)
Name: NF11389_high_18
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 30370908 - 30371258
Alignment:
| Q |
18 |
gcgtgctaagtttacgttgaaacggttaatagaaggtaatgctaatacgcctttgaagaaaaccgacgctaggttaagcgaaattgcttcggcatttttg |
117 |
Q |
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| T |
30370908 |
gcgtgctaagtttacgttgaaacggttaatagaaggtaatgctaatacgcctttgaagaaaaccgacgctaggttaagcgaaattgcttcggcatttttg |
30371007 |
T |
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| Q |
118 |
gaattgggtgagcgaagtcatggtgaattggatttgttgatttatattttgtgttcacagtttcagcatttagggtttcattgggcttttgatactttca |
217 |
Q |
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| T |
30371008 |
gaattgggtgagcgaagtcatggtgaattggatttgttgatttatattttgtgttcacagtttcagcatttagggtttcattgggcttttgatactttca |
30371107 |
T |
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| Q |
218 |
tgttgtttactagtaagggtgtttttccttcgttgaaaagttgtaattttttgatgagttcgttggtgaagagtaatgagcttcataagagttttagggt |
317 |
Q |
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| T |
30371108 |
tgttgtttactagtaagggtgtttttccttcgttgaaaagttgtaattttttgatgagttcgttggtgaagagtaatgagcttcataagagttttagggt |
30371207 |
T |
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| Q |
318 |
ttttgacgcgatgtgccgcggtggtgttttgattgatgtttatacctatgc |
368 |
Q |
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| T |
30371208 |
ttttgacgcgatgtgccgcggtggtgttttgattgatgtttatacttatgc |
30371258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 51392253 - 51392488
Alignment:
| Q |
19 |
cgtgctaagtttacgttgaaacggttaatagaaggtaatgctaatacgcctttgaagaaaaccgacgctaggttaagcgaaattgcttcggcatttttgg |
118 |
Q |
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| T |
51392253 |
cgtgctaggtttacgttgaaacggttaatcgaaggtaatgctaagacgccgttaaagaaaatcgacgctaggttaagtgacatagcttctacgtttttga |
51392352 |
T |
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| Q |
119 |
aattgggtgagcgaagtcatggtgaattggatttgttgatttatattttgtgttcacagtttcagcatttagggtttcattgggcttttgatactttcat |
218 |
Q |
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| T |
51392353 |
agttgaatgattaaattcatggtgaattggatttgttgatttatatt--gtgttcacagtttctgcatttagggtttcattgggctattgatactttcat |
51392450 |
T |
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| Q |
219 |
gttgtttactagtaagggtgtttttccttcgttgaaaa |
256 |
Q |
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| T |
51392451 |
gttgtttactagtaatggtgtttttccttctttgaaaa |
51392488 |
T |
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