View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11389_high_19 (Length: 360)

Name: NF11389_high_19
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11389_high_19
NF11389_high_19
[»] chr5 (19 HSPs)
chr5 (19-349)||(9074616-9074943)
chr5 (19-349)||(8535384-8535714)
chr5 (19-349)||(8528829-8529156)
chr5 (19-349)||(1600193-1600503)
chr5 (237-310)||(8636968-8637041)
chr5 (245-310)||(8644321-8644386)
chr5 (245-310)||(8677923-8677988)
chr5 (235-308)||(2856824-2856897)
chr5 (235-308)||(2874434-2874507)
chr5 (245-302)||(2904938-2904995)
chr5 (245-329)||(8641480-8641564)
chr5 (235-308)||(2844997-2845070)
chr5 (83-196)||(8677752-8677865)
chr5 (278-349)||(8548002-8548073)
chr5 (113-182)||(8636844-8636913)
chr5 (140-192)||(8548141-8548193)
chr5 (113-196)||(8644189-8644272)
chr5 (19-59)||(8641257-8641297)
chr5 (19-59)||(9003353-9003393)
[»] chr7 (2 HSPs)
chr7 (27-349)||(48361745-48362064)
chr7 (19-349)||(35779720-35780041)
[»] chr4 (1 HSPs)
chr4 (19-349)||(9442990-9443317)
[»] chr1 (2 HSPs)
chr1 (227-312)||(26324200-26324285)
chr1 (139-182)||(5130810-5130853)
[»] scaffold0627 (3 HSPs)
scaffold0627 (227-308)||(4738-4819)
scaffold0627 (19-61)||(4543-4585)
scaffold0627 (140-182)||(4663-4705)
[»] chr6 (2 HSPs)
chr6 (245-308)||(16716455-16716518)
chr6 (19-63)||(16716230-16716274)


Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 9074943 - 9074616
Alignment:
Q  19 cttcaatgaaattaaacttggaatatgtgggattacttcaaaaaacattgaacgactcccatgtattcggaaaagtttgaattcatatttttcaggttca 118  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |||| ||||||| ||||||| |||||||||    
T  9074943 cttcaatgaaattagacttggaatatgtgggattacttcaaaaaactttgaatgactcccatgaattcgaaaaactttgaatccatatttctcaggttca 9074844  T
Q  119 tagtacatcaaacaattttgggaatgatgtaacaatatggcagcaccttcttcaaagtgttttataggcaaacataaatttgtagtccatgaagtacgat 218  Q
    ||| | || |||||||| | | |||||| |||||||||||||||||||||||||||||||||||| |||   ||||||  || |  ||||| | || ||     
T  9074843 tagaagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgttttatcggc---cataaacctgaaccccatgtaataagac 9074747  T
Q  219 cgccagatggattgaacgaagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatcagagaacaa 318  Q
     ||| || ||||||||||||||||  ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| || ||    
T  9074746 agcccgaaggattgaacgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcattcataacccacactgaaacatcagataaaaa 9074647  T
Q  319 gatccagtcacaaatgtaaagtaatcccttt 349  Q
      ||||||||||||||||||| |||||||||    
T  9074646 tgtccagtcacaaatgtaaagaaatcccttt 9074616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 8535384 - 8535714
Alignment:
Q  19 cttcaatgaaattaaacttggaatatgtgggattacttcaaaaaacattgaacgactcccatgtattcggaaaagtttgaattcatatttttcaggttca 118  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||  |||||| |||||| |  ||||| |||| || |||| ||||||| |||||||||    
T  8535384 cttcaatgaaattagacttggaatgtgtgggattacttcaaaaaaatttgaactactcccgtaaattcgaaaaacttcgaatccatatttctcaggttca 8535483  T
Q  119 tagtacatcaaacaattttgggaatgatgtaacaatatggcagcaccttcttcaaagtgttttataggcaaacataaatttgtagtccatgaagtacgat 218  Q
    ||||| || ||||||||   |||||||| |||||||||||||||||||||||||||||||||||| ||| | | ||||       ||| || |  ||||     
T  8535484 tagtagataaaacaattgcaggaatgatataacaatatggcagcaccttcttcaaagtgttttattggccagcttaaaccatatctccgtggaacacgac 8535583  T
Q  219 cgccagatggattgaacgaagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatcagagaacaa 318  Q
       | || |||||||| |||||||  |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||    
T  8535584 tttccgaaggattgaatgaagtatcaatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacatcagataaaaa 8535683  T
Q  319 gatccagtcacaaatgtaaagtaatcccttt 349  Q
    | || | |||||||||||||| |||||||||    
T  8535684 ggtcgaatcacaaatgtaaagaaatcccttt 8535714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 8528829 - 8529156
Alignment:
Q  19 cttcaatgaaattaaacttggaatatgtgggattacttcaaaaaacattgaacgactcccatgtattcggaaaagtttgaattcatatttttcaggttca 118  Q
    |||||||||||||| ||||||||| |||||||||||||||||| |  ||   ||||||||||| ||||| |||| ||||||  ||||||||||||||||     
T  8528829 cttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcg 8528928  T
Q  119 tagtacatcaaacaattttgggaatgatgtaacaatatggcagcaccttcttcaaagtgttttataggcaaacataaatttgtagtccatgaagtacgat 218  Q
    |||||  | ||||||||   |||||||| | |||||||||||||||||||||||||||||||||| ||| | | ||||     |  || || |  |||||    
T  8528929 tagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgat 8529028  T
Q  219 cgccagatggattgaacgaagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatcagagaacaa 318  Q
      ||| | |||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |  ||    
T  8529029 --cca-aaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaa 8529125  T
Q  319 gatccagtcacaaatgtaaagtaatcccttt 349  Q
    | ||   ||||||||||| || |||||||||    
T  8529126 ggtcggatcacaaatgtatagaaatcccttt 8529156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 1600503 - 1600193
Alignment:
Q  19 cttcaatgaaattaaacttggaatatgtgggattacttcaaaaaacattgaacgactcccatgtattcggaaaagtttgaattcatatttttcaggttca 118  Q
    |||||||||||||| |||||||||||| ||||||| ||||||| |   ||||||||||||||| |||   |||  |||| ||  ||||||  ||||||||    
T  1600503 cttcaatgaaattagacttggaatatgcgggattatttcaaaacaatctgaacgactcccatgaatttcaaaagctttgcatcgatatttcgcaggttca 1600404  T
Q  119 tagtacatcaaacaattttgggaatgatgtaacaatatggcagcaccttcttcaaagtgttttataggcaaacataaatttgtagtccatgaagtacgat 218  Q
    || || || |||||||| |   ||| || |||||||||||||||||||||||||||||||| ||| |||   ||||||   | |  |||||||  |        
T  1600403 taatagattaaacaattgt---aatcatataacaatatggcagcaccttcttcaaagtgttgtatcggc---cataaacccgaacaccatgaaaaa---- 1600314  T
Q  219 cgccagatggattgaacgaagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatcagagaacaa 318  Q
            |||||||| ||||||| |   |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || ||    
T  1600313 --------ggattgaatgaagtatcgtacttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaa 1600222  T
Q  319 gatccagtcacaaatgtaaagtaatcccttt 349  Q
    | |  |||||||||||||||| |||||||||    
T  1600221 ggt--agtcacaaatgtaaagaaatcccttt 1600193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 8636968 - 8637041
Alignment:
Q  237 aagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatca 310  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  8636968 aagtatcgatgttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatca 8637041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 245 - 310
Target Start/End: Original strand, 8644321 - 8644386
Alignment:
Q  245 atgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatca 310  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  8644321 atgttgtaaaccttagtccatgattctccaatgtcatattcattcataacccacattgcaacatca 8644386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 245 - 310
Target Start/End: Original strand, 8677923 - 8677988
Alignment:
Q  245 atgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatca 310  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||    
T  8677923 atgttgtaaaccttagtccatgattctccaatgccatattcattcatatcccacattgcaacatca 8677988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 2856897 - 2856824
Alignment:
Q  235 cgaagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacat 308  Q
    ||||||||  |||||||||||  |||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  2856897 cgaagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacat 2856824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 2874507 - 2874434
Alignment:
Q  235 cgaagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacat 308  Q
    ||||||||  |||||||||||  |||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  2874507 cgaagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacat 2874434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 2904995 - 2904938
Alignment:
Q  245 atgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattg 302  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  2904995 atgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattg 2904938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 8641480 - 8641564
Alignment:
Q  245 atgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatcagagaacaagatccagtcac 329  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||  |||||| |||| ||| || ||||||    
T  8641480 atgttgtaagccttagtccatgattctccaatgccatattcattcataacccacactgtgacatcaaagaaaaaggtcgagtcac 8641564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 2845070 - 2844997
Alignment:
Q  235 cgaagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacat 308  Q
    ||||||||  ||| |||||||  |||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  2845070 cgaagtatcaatgctgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacat 2844997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 8677752 - 8677865
Alignment:
Q  83 attcggaaaagtttgaattcatatttttcaggttcatagtacatcaaacaattttgggaatgatgtaacaatatggcagcaccttcttcaaagtgtttta 182  Q
    ||||| |||| ||||||  ||| ||| || ||||||||||| || | ||||||   |||||||| |||||||||||||||||| ||||||||||||||||    
T  8677752 attcgaaaaactttgaaaccatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagcaccctcttcaaagtgtttta 8677851  T
Q  183 taggcaaacataaa 196  Q
      ||| ||||||||    
T  8677852 ccggccaacataaa 8677865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 349
Target Start/End: Complemental strand, 8548073 - 8548002
Alignment:
Q  278 ccatattcattcataacccacattgaaacatcagagaacaagatccagtcacaaatgtaaagtaatcccttt 349  Q
    |||||||| |||||||||||||||| ||||| |||||   || |||||||||||||||||||  ||||||||    
T  8548073 ccatattcgttcataacccacattgtaacataagagagatagttccagtcacaaatgtaaagacatcccttt 8548002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 8636844 - 8636913
Alignment:
Q  113 ggttcatagtacatcaaacaattttgggaatgatgtaacaatatggcagcaccttcttcaaagtgtttta 182  Q
    ||||||||||| || | ||||||   |||||||| ||||||||||||||| || ||||||||||||||||    
T  8636844 ggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgtttta 8636913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 8548193 - 8548141
Alignment:
Q  140 gaatgatgtaacaatatggcagcaccttcttcaaagtgttttataggcaaaca 192  Q
    ||||||| |||||||| ||||||||| ||||||||||||||||  ||||||||    
T  8548193 gaatgatataacaatacggcagcaccctcttcaaagtgttttaccggcaaaca 8548141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 196
Target Start/End: Original strand, 8644189 - 8644272
Alignment:
Q  113 ggttcatagtacatcaaacaattttgggaatgatgtaacaatatggcagcaccttcttcaaagtgttttataggcaaacataaa 196  Q
    ||||||||||| || | ||||||   |||||||| ||||||||||||||| || |||||||||| |||||  ||| ||||||||    
T  8644189 ggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagttttttaccggccaacataaa 8644272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 8641257 - 8641297
Alignment:
Q  19 cttcaatgaaattaaacttggaatatgtgggattacttcaa 59  Q
    ||||||||| |||| ||||||||||||||| ||||||||||    
T  8641257 cttcaatgagattagacttggaatatgtggaattacttcaa 8641297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 9003353 - 9003393
Alignment:
Q  19 cttcaatgaaattaaacttggaatatgtgggattacttcaa 59  Q
    ||||||||| |||| ||||||||||||||| ||||||||||    
T  9003353 cttcaatgagattagacttggaatatgtggaattacttcaa 9003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 27 - 349
Target Start/End: Complemental strand, 48362064 - 48361745
Alignment:
Q  27 aaattaaacttggaatatgtgggattacttcaaaaaacattgaacgactcccatgtattcggaaaagtttgaattcatatttttcaggttcatagtacat 126  Q
    |||||| |||||||||||||||||||||||||||| |   |||||||||||| || ||  | |||  |||| ||  |||||| ||||||||||| || ||    
T  48362064 aaattagacttggaatatgtgggattacttcaaaagaacctgaacgactcccgtgaatatgaaaagctttgcatctatatttctcaggttcataatagat 48361965  T
Q  127 caaacaattttgggaatgatgtaacaatatggcagcaccttcttcaaagtgttttataggcaaacataaatttgtagtccatgaagtacgatcgccagat 226  Q
     ||||  |  | |||||||| |||||||||||||||||||||||||||||||||||| |||   ||||||  || |  ||| |||| |  |  ||  ||     
T  48361964 taaacggtcgtaggaatgatataacaatatggcagcaccttcttcaaagtgttttatcggc---cataaagctgaatgccaagaagcaaaactgctcgaa 48361868  T
Q  227 ggattgaacgaagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatcagagaacaagatccagt 326  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    ||| || |||    
T  48361867 ggattgaacgcagtattgatgttgtaaaccttagtctatgattcttcaataccatattcattcataacccacattgaaacatcagatgcaaaggtcgagt 48361768  T
Q  327 cacaaatgtaaagtaatcccttt 349  Q
    ||||||||||||| |||||||||    
T  48361767 cacaaatgtaaagaaatcccttt 48361745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 35779720 - 35780041
Alignment:
Q  19 cttcaatgaaattaaacttggaatatgtgggattacttcaaaaaacattgaacgactcccatgtattcggaaaagtttgaattcatatttttcaggttca 118  Q
    ||||||||| |||| ||||||||||||||| |||||||||| | |  |||||||| ||||| | ||||| |||| |||| || ||||||| |||||||||    
T  35779720 cttcaatgatattagacttggaatatgtggaattacttcaacagattttgaacgagtcccacgaattcgaaaaactttgtatccatatttctcaggttca 35779819  T
Q  119 tagtacatcaaacaattttgggaatgatgtaacaatatggcagcaccttcttcaaagtgttttataggcaaacataaatttgtagtccatgaagtacgat 218  Q
     |||| || ||||||||    ||||||| |||||||||||||         |||||| ||||||  ||| ||||||||     |  |  |||| || |||    
T  35779820 aagtagataaaacaattgcatgaatgatataacaatatggca---------tcaaagggttttaccggccaacataaaccataacgcggtgaaataggat 35779910  T
Q  219 cgcc-agatggattgaacgaagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatcagagaaca 317  Q
     ||| ||| | ||||| |||||| |  |||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||| |||||||   || |    
T  35779911 agcctaga-gaattgaccgaagtctcaatgttgtaaaccttagtccacgattcttcaatgccatgctcattcataacccacattgtaacatcaacaaaaa 35780009  T
Q  318 agatccagtcacaaatgtaaagtaatcccttt 349  Q
    |  || |||||||||||||||| |||||||||    
T  35780010 aattcaagtcacaaatgtaaagaaatcccttt 35780041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 9442990 - 9443317
Alignment:
Q  19 cttcaatgaaattaaacttggaatatgtgggattacttcaaaaaacattgaacgactcccatgtattcggaaaagtttgaattcatatttttcaggttca 118  Q
    |||||||||||||| ||||||||| ||| |||||||||||||| |  ||   ||||||||||| ||||| |||| ||||||  ||||||||||||||||     
T  9442990 cttcaatgaaattagacttggaatgtgttggattacttcaaaataatttttccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcg 9443089  T
Q  119 tagtacatcaaacaattttgggaatgatgtaacaatatggcagcaccttcttcaaagtgttttataggcaaacataaatttgtagtccatgaagtacgat 218  Q
    |||||  | ||||||||   |||||||| | |||||||||||||||||||||||||||||||||| ||| | | ||||     |  || || |  |||||    
T  9443090 tagtaggtaaaacaattgaaggaatgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgat 9443189  T
Q  219 cgccagatggattgaacgaagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatcagagaacaa 318  Q
      ||| | |||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |  ||    
T  9443190 --cca-aaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaa 9443286  T
Q  319 gatccagtcacaaatgtaaagtaatcccttt 349  Q
    | ||   ||||||||||| || |||||||||    
T  9443287 ggtcggatcacaaatgtatagaaatcccttt 9443317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 26324285 - 26324200
Alignment:
Q  227 ggattgaacgaagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacatcaga 312  Q
    ||||||||||||| || ||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  26324285 ggattgaacgaagcatcgatgttgtaaatcttagtccatgattctccagtgccatattcattcataacccacattgaaacatcaga 26324200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 5130810 - 5130853
Alignment:
Q  139 ggaatgatgtaacaatatggcagcaccttcttcaaagtgtttta 182  Q
    |||||||| || ||||||||||||||| ||||||||||||||||    
T  5130810 ggaatgatatagcaatatggcagcaccctcttcaaagtgtttta 5130853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 227 - 308
Target Start/End: Original strand, 4738 - 4819
Alignment:
Q  227 ggattgaacgaagtattgatgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacat 308  Q
    |||||| || ||||||| |||| |||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||    
T  4738 ggattgtacaaagtattaatgtggtaaaccttagtccatgattcaccaatgccatattcattcataacccacattgtaacat 4819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 4543 - 4585
Alignment:
Q  19 cttcaatgaaattaaacttggaatatgtgggattacttcaaaa 61  Q
    ||||||||| |||| ||||||||||||||| ||||||||||||    
T  4543 cttcaatgagattagacttggaatatgtggaattacttcaaaa 4585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 4663 - 4705
Alignment:
Q  140 gaatgatgtaacaatatggcagcaccttcttcaaagtgtttta 182  Q
    ||||||||||||||||  |||||||| ||||||||||||||||    
T  4663 gaatgatgtaacaatacagcagcaccctcttcaaagtgtttta 4705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 16716455 - 16716518
Alignment:
Q  245 atgttgtaaaccttagtccatgattcttcaatgccatattcattcataacccacattgaaacat 308  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  16716455 atgtggtaaaccttagtccatgattctccaatgccatattcattcataacccacattgtaacat 16716518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 16716230 - 16716274
Alignment:
Q  19 cttcaatgaaattaaacttggaatatgtgggattacttcaaaaaa 63  Q
    ||||||||| |||| ||||||||||||||| ||||||| ||||||    
T  16716230 cttcaatgagattagacttggaatatgtggaattactttaaaaaa 16716274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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