View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_high_21 (Length: 347)
Name: NF11389_high_21
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 332
Target Start/End: Complemental strand, 42534014 - 42533693
Alignment:
| Q |
11 |
cataggaacatgagagaagatgcagctgcgtcactggcaaccataccaccggcaagtctctcgtaactatcaatacaaaacaaagaaagcgaaagctgaa |
110 |
Q |
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|||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42534014 |
cataagaatatgagagaagatgcagctgcgtcgctggcaaccataccaccggcaagtctctcgtaactatcaatacaaaacaaagaaagcgaaagctgaa |
42533915 |
T |
|
| Q |
111 |
cctcatgccgagtccaaacctgattcctaaccatttccgactcaccgagtcgactcagcaccggtctaacacacaccatgtacagcctcttgtaaccacc |
210 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42533914 |
cctcatgccgagtccaaacctgtttcctaaccatttccgactcaccgagtcgactcagcaccggtctaacacacaccatgtacagcctcttgtaaccacc |
42533815 |
T |
|
| Q |
211 |
gagagccaccacaactggccggacggaagctggtggtggagtggagacatggcggaagcagaggtgttcccagattgagtcgtctttggttgttaagttg |
310 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42533814 |
cagagccaccacgactggccggacggaagctggtggtggagtggagacatggcggaagcagaggtgttcccagattgagtcgtctttggttgttaagttg |
42533715 |
T |
|
| Q |
311 |
caccataagcgacagacacatg |
332 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
42533714 |
caccataagcgacagacacatg |
42533693 |
T |
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