View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_high_24 (Length: 300)
Name: NF11389_high_24
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_high_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 40511593 - 40511303
Alignment:
| Q |
1 |
tgagccattttccaaggtaacaatcatggcggccatttatgtagcaccgactctcctgatcgaataagtaccgtatttgatactaacatgacacgaccct |
100 |
Q |
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| T |
40511593 |
tgagccattttccaaggtaacaatcatggcggccatttatgtagcaccgactctcctgatcgaataagtaccgtatttgatactaacatgacacgaccct |
40511494 |
T |
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| Q |
101 |
gatatatatggttacattcaatctttttcaatttttgtatatttttattggcgtcaaggtgttggtgtcaatattgtgtcatgtgtccatgcccatggca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40511493 |
gatatatatggttacattcaatctttttcaatttttgtatatttttattggcgtcgaggtgttggtgtcaatattgtgtcatgtgtctatgcccatggca |
40511394 |
T |
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| Q |
201 |
aaacatagtggcaacgtatagtgactaaaacttagaactattttacatttttattgctttatccccttactttaatccaattgagatggtgttcttctca |
300 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40511393 |
aaacatagtgg---------gtgactaaaacttacaactattttacatttttattgctttatccccttactttaatccaattgagatggtgttcttctca |
40511303 |
T |
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