View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_high_25 (Length: 281)
Name: NF11389_high_25
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 37844702 - 37844452
Alignment:
| Q |
19 |
gtaactactggaccaacgccagagggaaggaaaatcaaacaaggccaaacataggttacttttggaacattcagagcagctaccttcacaagcttttcag |
118 |
Q |
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| T |
37844702 |
gtaactactggaccaacgccagagggaaggaaaatcaaacaaggccaaacataggttacttttggaacattcagagcagctaccttcacaagcttttcag |
37844603 |
T |
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| Q |
119 |
ctattatcttaccatttcccatcagtttaactaaaagtccatcaatacaaattgttggtttgagattccaatcatcttcaacaccgaatccagatagaaa |
218 |
Q |
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| T |
37844602 |
ctattatcttaccatttcccatcagtttaactaaaagcccatcaatacaaattgttggtttgagattccaatcatcttcaacaccgaatccagatagaaa |
37844503 |
T |
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| Q |
219 |
ttgatcaacgtcatgccaaaagctagagtcactataataatccacaggttc |
269 |
Q |
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| T |
37844502 |
ttgatcaatgtcatgccaaaagctagagtcactataataatccataggttc |
37844452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 36867238 - 36867190
Alignment:
| Q |
39 |
agagggaaggaaaatcaaacaaggccaaacataggttacttttggaaca |
87 |
Q |
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| T |
36867238 |
agagggaaggaagatcaaactaggccaaacatagtttatttttggaaca |
36867190 |
T |
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