View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11389_high_28 (Length: 257)

Name: NF11389_high_28
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11389_high_28
NF11389_high_28
[»] chr2 (3 HSPs)
chr2 (5-241)||(8714708-8714947)
chr2 (39-241)||(8671876-8672079)
chr2 (20-241)||(8714971-8715191)
[»] chr3 (9 HSPs)
chr3 (20-160)||(11605516-11605656)
chr3 (20-241)||(14331304-14331524)
chr3 (20-241)||(14335264-14335484)
chr3 (28-153)||(13752937-13753062)
chr3 (28-153)||(13766340-13766465)
chr3 (20-130)||(11615607-11615717)
chr3 (30-142)||(14331635-14331747)
chr3 (30-142)||(14335595-14335707)
chr3 (63-119)||(13739514-13739570)
[»] chr6 (1 HSPs)
chr6 (46-153)||(35079181-35079288)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 8714947 - 8714708
Alignment:
Q  5 tgtgatgattcagaggagctttatcacaaacaaaatgattgtgaagga---tatgttcacatatttcttcatattttttctttgttggaattaacctcca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8714947 tgtgatgattcagaggagctttatcacaaacaaaatgattgtgaaggaggatatgttcacatatttcttcatattttttctttgttggaattaacctcca 8714848  T
Q  102 tttagagcaggaatcacattgaacagtgatcgcaccaactattggcaaaacttcaggagttaagtttggaggttaacactaaagaggatctggggttaaa 201  Q
    |||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  8714847 tttagaacaggaatcacattgaacagtgctcgcgccaactattggcaaaacttcaggagttaagtttggaggttaacaccaaagaggatctggggttaag 8714748  T
Q  202 ttgatttcagttgactccatttgtcacatgttcataaagg 241  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  8714747 ttgatttcagttgactccatttgtcacatggtcataaagg 8714708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 39 - 241
Target Start/End: Complemental strand, 8672079 - 8671876
Alignment:
Q  39 atgattgtgaaggatatgttcacatatttcttcatattttttctttgttggaattaacctccatttagagcaggaatcacattgaacagtgatcgcacca 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||  |||||||| |||    
T  8672079 atgattgtgaaggatatgttcacatatttcttcatattttttctttgttggaatcaacctccatttagaacaggaatcacattgaatggtgatcgcgcca 8671980  T
Q  139 actattggcaaaacttcaggagttaagtttggaggttaaca-ctaaagaggatctggggttaaattgatttcagttgactccatttgtcacatgttcata 237  Q
    |||||||||||||||  ||||||| |||||||||||||||| | |||||||||| ||||||||||||||||| |||| |||||||||||| ||| |||||    
T  8671979 actattggcaaaactctaggagttgagtttggaggttaacacccaaagaggatcaggggttaaattgatttcggttgtctccatttgtcatatggtcata 8671880  T
Q  238 aagg 241  Q
    ||||    
T  8671879 aagg 8671876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 8714971 - 8715191
Alignment:
Q  20 gagctttatcacaaacaaaatgattgtgaaggatatgttcacatatttcttcatattttttctttgttggaattaacctccatttagagcaggaatcaca 119  Q
    |||||||||||||||||||| |||| |||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| || ||||||||    
T  8714971 gagctttatcacaaacaaaaggattttgaaggatatgttcacgtatttattcatattttttctttgttggaatcaacctccatttagaacacgaatcaca 8715070  T
Q  120 ttgaacagtgatcgcaccaactattggcaaaacttcaggagttaagtttggaggttaacactaaagaggatctggggttaaattgatttcagttgactcc 219  Q
    ||||||||||| ||  ||||||||| | ||||||  | ||| | | |||||||||| |||| |||||||||| | || ||| |||||||| |||| ||||    
T  8715071 ttgaacagtgaacgtgccaactattcgaaaaactctaagagctgaatttggaggttcacaccaaagaggatcagtgg-taagttgatttcggttgtctcc 8715169  T
Q  220 atttgtcacatgttcataaagg 241  Q
    |||||||||||| |||||||||    
T  8715170 atttgtcacatggtcataaagg 8715191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 11605656 - 11605516
Alignment:
Q  20 gagctttatcacaaacaaaatgattgtgaaggatatgttcacatatttcttcatattttttctttgttggaattaacctccatttagagcaggaatcaca 119  Q
    |||||||  |||||| |||| |||  |||||| ||||||| | |||||||||||||||||||||||||||||| |||||||||||| | ||||||| |||    
T  11605656 gagcttttacacaaataaaaggatgttgaaggttatgttcccgtatttcttcatattttttctttgttggaatcaacctccatttataacaggaattaca 11605557  T
Q  120 ttgaacagtgatcgcaccaactattggcaaaacttcaggag 160  Q
    ||||||||||| ||||||||||| ||||||||||| |||||    
T  11605556 ttgaacagtgaacgcaccaactactggcaaaactttaggag 11605516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 14331524 - 14331304
Alignment:
Q  20 gagctttatcacaaacaaaatgattgtgaaggatatgttcacatatttcttcatattttttctttgttggaattaacctccatttagagcaggaatcaca 119  Q
    |||||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||||| | |||| |||||||||||||  ||| |||||||    
T  14331524 gagctttatcacaaacaaaaggattttgaatgatatgttcacgtatttcttcatattttttctttgctagaatgaacctccatttagtacagaaatcaca 14331425  T
Q  120 ttgaacagtgatcgcaccaactattggcaaaacttcagg-agttaagtttggaggttaacactaaagaggatctggggttaaattgatttcagttgactc 218  Q
    ||||||| ||| ||| ||||||| ||| ||||||  ||| ||| ||  |||||||| ||||| |||||| || ||||| ||| |||||  |||  | |||    
T  14331424 ttgaacactgaacgcgccaactactggaaaaactctaggtagtgaa-cttggaggtaaacaccaaagagtatatgggg-taagttgatcccagacgtctc 14331327  T
Q  219 catttgtcacatgttcataaagg 241  Q
    ||||||||||| | |||||||||    
T  14331326 catttgtcacaaggtcataaagg 14331304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 14335484 - 14335264
Alignment:
Q  20 gagctttatcacaaacaaaatgattgtgaaggatatgttcacatatttcttcatattttttctttgttggaattaacctccatttagagcaggaatcaca 119  Q
    |||||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||||| | |||| |||||||||||||  ||| |||||||    
T  14335484 gagctttatcacaaacaaaaggattttgaatgatatgttcacgtatttcttcatattttttctttgctagaatgaacctccatttagtacagaaatcaca 14335385  T
Q  120 ttgaacagtgatcgcaccaactattggcaaaacttcagg-agttaagtttggaggttaacactaaagaggatctggggttaaattgatttcagttgactc 218  Q
    ||||||| ||| ||| ||||||| ||| ||||||  ||| ||| ||  |||||||| ||||| |||||| || ||||| ||| |||||  |||  | |||    
T  14335384 ttgaacactgaacgcgccaactactggaaaaactctaggtagtgaa-cttggaggtaaacaccaaagagtatatgggg-taagttgatcccagacgtctc 14335287  T
Q  219 catttgtcacatgttcataaagg 241  Q
    ||||||||||| | |||||||||    
T  14335286 catttgtcacaaggtcataaagg 14335264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 13752937 - 13753062
Alignment:
Q  28 tcacaaacaaaatgattgtgaaggatatgttcacatatttcttcatattttttctttgttggaattaacctccatttagagcaggaatcacattgaacag 127  Q
    |||||||||||| |||  |||||| ||||||||| ||||||||||||||||||||  |||||| |||||||||||||||| ||| ||| |||||||||||    
T  13752937 tcacaaacaaaaggatgttgaaggttatgttcacgtatttcttcatattttttctccgttggagttaacctccatttagaacagtaatgacattgaacag 13753036  T
Q  128 tgatcgcaccaactattggcaaaact 153  Q
     ||  |||||||||| ||||||||||    
T  13753037 cgaaagcaccaactactggcaaaact 13753062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 13766340 - 13766465
Alignment:
Q  28 tcacaaacaaaatgattgtgaaggatatgttcacatatttcttcatattttttctttgttggaattaacctccatttagagcaggaatcacattgaacag 127  Q
    |||||||||||| |||  |||||| ||||||||| ||||||||||||||||||||  |||||| |||||||||||||||| ||| ||| |||||||||||    
T  13766340 tcacaaacaaaaggatgttgaaggttatgttcacgtatttcttcatattttttctccgttggagttaacctccatttagaacagtaatgacattgaacag 13766439  T
Q  128 tgatcgcaccaactattggcaaaact 153  Q
     ||  |||||||||| ||||||||||    
T  13766440 cgaaagcaccaactactggcaaaact 13766465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 11615607 - 11615717
Alignment:
Q  20 gagctttatcacaaacaaaatgattgtgaaggatatgttcacatatttcttcatattttttctttgttggaattaacctccatttagagcaggaatcaca 119  Q
    ||||||| |||||||||||| |||| |||||||||| ||||| ||||||||||||||||| |||||| ||||  |||||||||||| | || ||| ||||    
T  11615607 gagctttttcacaaacaaaaggattttgaaggatatattcacgtatttcttcatatttttcctttgtcggaaccaacctccatttataacaagaagcaca 11615706  T
Q  120 ttgaacagtga 130  Q
    |||||||||||    
T  11615707 ttgaacagtga 11615717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 14331635 - 14331747
Alignment:
Q  30 acaaacaaaatgattgtgaaggatatgttcacatatttcttcatattttttctttgttggaattaacctccatttagagcaggaatcacattgaacagtg 129  Q
    ||||||||||  ||| ||||  || ||||||  ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| ||    
T  14331635 acaaacaaaagaattttgaaaaatttgttcatgtatttcttcatattttttctttgttggaattaacctctatttagaacaggaattacattgaacaatg 14331734  T
Q  130 atcgcaccaacta 142  Q
    | | |||||||||    
T  14331735 aacacaccaacta 14331747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 14335595 - 14335707
Alignment:
Q  30 acaaacaaaatgattgtgaaggatatgttcacatatttcttcatattttttctttgttggaattaacctccatttagagcaggaatcacattgaacagtg 129  Q
    ||||||||||  ||| ||||  || ||||||  ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| ||    
T  14335595 acaaacaaaagaattttgaaaaatttgttcatgtatttcttcatattttttctttgttggaattaacctctatttagaacaggaattacattgaacaatg 14335694  T
Q  130 atcgcaccaacta 142  Q
    | | |||||||||    
T  14335695 aacacaccaacta 14335707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 13739514 - 13739570
Alignment:
Q  63 tatttcttcatattttttctttgttggaattaacctccatttagagcaggaatcaca 119  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||    
T  13739514 tatttcttcatatttttcctttgttggaattaacctccatttagcgcaggagtcaca 13739570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 35079288 - 35079181
Alignment:
Q  46 tgaaggatatgttcacatatttcttcatattttttctttgttggaattaacctccatttagagcaggaatcacattgaacagtgatcgcaccaactattg 145  Q
    |||||||||| |||||  |||||||||||||||| ||| |||||||| |||||||||||| | |||  | |||||||||||||||  |||||||||  ||    
T  35079288 tgaaggatatattcacgaatttcttcatatttttccttggttggaatcaacctccatttaaaacagttagcacattgaacagtgaaagcaccaactgctg 35079189  T
Q  146 gcaaaact 153  Q
    ||||||||    
T  35079188 gcaaaact 35079181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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