View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_high_29 (Length: 243)
Name: NF11389_high_29
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 35500655 - 35500881
Alignment:
| Q |
1 |
ccaagatcacatcatttttcccttgaaggttagtttgtgagacgtctgctaaaggcacttggaaagcttgctttgagccaaccatgaaagccagcatatt |
100 |
Q |
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| T |
35500655 |
ccaagatcacatcatttttcccttgaaggttagtttgtgagacgtctgctaaaggcacttcgaaagcttgctttgagccaaccatgaaagccagcatatt |
35500754 |
T |
|
| Q |
101 |
tcctgaaatggaaatgtaagcataagaatgtcgaccagtattagaactttataaaagtagtnnnnnnnttctattaaacaagctctctctggtatgaaga |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
35500755 |
tcctgaaatggaaatataagcataagaatgtcgaccagtattagaacttcataaaagtagtaaaaaaattctattaaacaagctctctctgctatgaaga |
35500854 |
T |
|
| Q |
201 |
gaaagacggcatgtggctggcaagtgg |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
35500855 |
gaaagacggcatgtggctggcaagtgg |
35500881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 7070961 - 7070847
Alignment:
| Q |
1 |
ccaagatcacatcatttttcccttgaaggttagtttgtgagacgtctgctaaaggcacttggaaagcttgctttgagccaaccatgaaagccagcatatt |
100 |
Q |
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|||| |||||||||||||||||||||||||| ||||| ||||| |||||||||| ||| | |||||||||||||| ||||||||||||||||||||||| |
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| T |
7070961 |
ccaacatcacatcatttttcccttgaaggtttgtttgggagacatctgctaaagacacctcaaaagcttgctttgaaccaaccatgaaagccagcatatt |
7070862 |
T |
|
| Q |
101 |
tcctgaaatggaaat |
115 |
Q |
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||||||||||||||| |
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| T |
7070861 |
tcctgaaatggaaat |
7070847 |
T |
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