View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_high_3 (Length: 641)
Name: NF11389_high_3
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 3 - 440
Target Start/End: Complemental strand, 3246385 - 3245948
Alignment:
| Q |
3 |
cacgcgtgttggccaccatggatattttgatcaaaagtgtcggtattacattgatcctcacccataaattaccttctttggtgttgttaaattagcataa |
102 |
Q |
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| T |
3246385 |
cacgcgtattggccaccatgcatcttttgatcaaaagtgtcagtattacattgatcctcacccataaattaccttcttcggtgttgttaaattagcataa |
3246286 |
T |
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| Q |
103 |
taaactcaaaattttaatatatcttatatcaaccaacaattttaatgttagaaaaagcaaagtacaaaccagcgttgtcttggacaaaattagttgcaaa |
202 |
Q |
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| T |
3246285 |
taaactcaaaattttaatatatcctatatcaaccaacaattttaatgttagaaaaagcaaagtacaaaccagcgttgtcttggacaaaattagttgcaaa |
3246186 |
T |
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| Q |
203 |
agcagtggaagcaagggaatgcggtcgtgtatggcgaggaagattatcattttctttgtcataatgggaatcaaatgcagaaacagacatagattgtgta |
302 |
Q |
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| T |
3246185 |
agcagtggaagcaagggaatgcggtcgtgtatggcgaggaagattatcattttctttgtcataatgggaatcaaatgcagaaacagacatagattgtgta |
3246086 |
T |
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| Q |
303 |
tgacgaggaagtactggagatgaggtagcagaacgaggtgtaggaggaagtgcattgatacgaccagttattaatgccattcgatctgaacctctttctt |
402 |
Q |
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| T |
3246085 |
tgacgaggatgtactggagatgaggtagcagaacgaggtgtaggaggaagtgcattgatacgaccagttattaatgccattcgatctgaacctctttctt |
3245986 |
T |
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| Q |
403 |
gaatccttcttcttctctcttctgtattgttgttgttg |
440 |
Q |
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| T |
3245985 |
gaatccttcttcttctctcttctgtattgttgttgttg |
3245948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 536 - 594
Target Start/End: Complemental strand, 3245859 - 3245801
Alignment:
| Q |
536 |
acgagaatgttttagaattaagacccacaaacatcgccatttgacatgttcttgtctca |
594 |
Q |
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| T |
3245859 |
acgagaatgttttagaattaagacccacaaacatcgccatttgacatgttcttgtctca |
3245801 |
T |
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