View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_high_30 (Length: 243)
Name: NF11389_high_30
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 33971289 - 33971512
Alignment:
| Q |
4 |
agagagaagaagaaaacaaaagataattctcttcctggacactactatataaatacattacatgcatgttatgttagtttcaatttcatatcatcgtact |
103 |
Q |
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| T |
33971289 |
agagacaagaagaaaacaaaagataattctcttcctggccactactatataaatacattacatgcatgttatgttagtttcaatttcatatcatcgtact |
33971388 |
T |
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| Q |
104 |
acaacaatacttctgag------tttcacttcttgcatagctaaagaacacggacaggcaaaaacataatcaccaaatcaaaggttcgatatattgtact |
197 |
Q |
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| T |
33971389 |
acagcaatacttctgagtttcaatttcacttcttgcatagctaaagaacacggacaggcaaaaacataatcaccaaatcaaaggttcgatatattgtact |
33971488 |
T |
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| Q |
198 |
gtggaaattattgttctatttgac |
221 |
Q |
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|||||||||||||||||||||||| |
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| T |
33971489 |
gtggaaattattgttctatttgac |
33971512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 33989921 - 33990023
Alignment:
| Q |
62 |
tacatgcatgttat----gttagtttcaatttcatatcatcgtactacaacaatacttctgagtttcacttcttgcatagctaaagaacacggacaggca |
157 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||| | | ||||| | |||||||||||||||||||||||||||||| |
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| T |
33989921 |
tacatgcatgttatatacgttagtttcaatttcatatcatcgtactacatcaatatatttaagtttaaactcttgcatagctaaagaacacggacaggca |
33990020 |
T |
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| Q |
158 |
aaa |
160 |
Q |
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||| |
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| T |
33990021 |
aaa |
33990023 |
T |
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