View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_high_38 (Length: 208)
Name: NF11389_high_38
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_high_38 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 11788964 - 11789148
Alignment:
| Q |
11 |
agcaaaggcagtcctaagtttgattccaatttgggctacatctttagtttatggtattttctttgctcaaatatttacattcttcaccaagcaagggagt |
110 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11788964 |
agcaaaggcagtactaagtttgattccaatttgggctacatctttagtttatggtattatctttgctcaaatatttacattcttcaccaaacaagggagt |
11789063 |
T |
|
| Q |
111 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttctcttggatcgataggtggtgttgctattgttctcttca |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11789064 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttctcttggatcaataggtggtgttgctattgttctcttca |
11789148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 11801131 - 11801315
Alignment:
| Q |
11 |
agcaaaggcagtcctaagtttgattccaatttgggctacatctttagtttatggtattttctttgctcaaatatttacattcttcaccaagcaagggagt |
110 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11801131 |
agcaaaggcagtactaagtttgattccaatttgggctacatctttagtttatggtattatctttgctcaaatatttacattcttcaccaaacaagggagt |
11801230 |
T |
|
| Q |
111 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttctcttggatcgataggtggtgttgctattgttctcttca |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11801231 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttctcttggatcaataggtggtgttgctattgttctcttca |
11801315 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 11785377 - 11785561
Alignment:
| Q |
11 |
agcaaaggcagtcctaagtttgattccaatttgggctacatctttagtttatggtattttctttgctcaaatatttacattcttcaccaagcaagggagt |
110 |
Q |
| |
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|||||||||||| ||||| |||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11785377 |
agcaaaggcagtactaaggttgattccaatttgggcttcgactttagtttatggtattatctttgctcaaatatttacattcttcaccaagcaagggagt |
11785476 |
T |
|
| Q |
111 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttctcttggatcgataggtggtgttgctattgttctcttca |
195 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||| |
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| T |
11785477 |
tctatggagagaacaatatttcctggtttcaacatacctcccgcttctcttggaatgataggcggtgttgcaattgttctcttca |
11785561 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 11699136 - 11699320
Alignment:
| Q |
11 |
agcaaaggcagtcctaagtttgattccaatttgggctacatctttagtttatggtattttctttgctcaaatatttacattcttcaccaagcaagggagt |
110 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||||| ||| ||||||||||||| ||| ||||||||||| | ||||| ||||||||||||||||||||| |
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| T |
11699136 |
agcaaaggcagtactaaggttaattccaatttgggcgacaactttagtttatggcattgtctttgctcaagtttttactttcttcaccaagcaagggagt |
11699235 |
T |
|
| Q |
111 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttctcttggatcgataggtggtgttgctattgttctcttca |
195 |
Q |
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|
|| |||||||||||||||||||||| ||| |||||||||| ||||||||| | ||||| |||||||| |||||| |||||| |
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| T |
11699236 |
tcaatggagagaacaatatttcctggcttcgacatacctcctgcttctcttcaaacgataaacggtgttgcaattgttgtcttca |
11699320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 11677951 - 11678097
Alignment:
| Q |
11 |
agcaaaggcagtcctaagtttgattccaatttgggctacatctttagtttatggtattttctttgctcaaatatttacattcttcaccaagcaagggagt |
110 |
Q |
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|
||||||||| || ||||| ||| ||||||||||||||||| |||| |||||||||||| ||||||||||| | ||||||||||| ||||||||||||||| |
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| T |
11677951 |
agcaaaggctgtactaaggttggttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattctttaccaagcaagggagt |
11678050 |
T |
|
| Q |
111 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttc |
157 |
Q |
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||| || ||||||||||||||||||| || |||||||||||||||| |
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| T |
11678051 |
tctatgcagagaacaatatttcctggatttgacatacctcccgcttc |
11678097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 11686230 - 11686376
Alignment:
| Q |
11 |
agcaaaggcagtcctaagtttgattccaatttgggctacatctttagtttatggtattttctttgctcaaatatttacattcttcaccaagcaagggagt |
110 |
Q |
| |
|
||||||||| || ||||| ||| ||||||||||||||||| |||| |||||||||||| ||||||||||| | ||||||||||| ||||||||||||||| |
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| T |
11686230 |
agcaaaggctgtactaaggttggttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattctttaccaagcaagggagt |
11686329 |
T |
|
| Q |
111 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttc |
157 |
Q |
| |
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||| || ||||||||||||||||||| || |||||||||||||||| |
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| T |
11686330 |
tctatgcagagaacaatatttcctggatttgacatacctcccgcttc |
11686376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 11708589 - 11708735
Alignment:
| Q |
11 |
agcaaaggcagtcctaagtttgattccaatttgggctacatctttagtttatggtattttctttgctcaaatatttacattcttcaccaagcaagggagt |
110 |
Q |
| |
|
||||||||| || ||||| ||| ||||||||||| || || |||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||| | |
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| T |
11708589 |
agcaaaggctgttctaaggttggttccaatttggacttcaactttggtttatggtattgtctttgctcaagtttttacattcttcaccaagcaagggact |
11708688 |
T |
|
| Q |
111 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttc |
157 |
Q |
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|| |||||||||||||||||||||| || ||||||||||| |||| |
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| T |
11708689 |
tcaatggagagaacaatatttcctggatttgacatacctccctcttc |
11708735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 20379 - 20529
Alignment:
| Q |
11 |
agcaaaggcagtcctaagtttgattccaatttgggctacatctttagtttatggtattttctttgctcaaatatttacattcttcaccaagcaagggagt |
110 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||||||||||||| |||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||||| |
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| T |
20379 |
agcaaaggcagtactaaggttggttccaatttgggctacaactttggtttatggtattatctttgctcaagtttttacattcttcaccaagcaagggagt |
20478 |
T |
|
| Q |
111 |
tctttggagagaacaatatttcctggtttcaacatacctcccgcttctctt |
161 |
Q |
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||| || ||||||||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
20479 |
tctatgcagagaacaatatttcctggtttcgacatacctccggcttctctt |
20529 |
T |
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