View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_high_8 (Length: 484)
Name: NF11389_high_8
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 400
Target Start/End: Complemental strand, 41653220 - 41652810
Alignment:
| Q |
11 |
cacagaacctgttaagaagaaataatgatgaatgatgaatgcaagaaacagaaaagatacaactaacatgagaaactgacctggttgtcccaagaagtag |
110 |
Q |
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| T |
41653220 |
cacagaacctgttaagaagaaataatgatgaatgatgaatgcaagaaacagaaaagatacaactagaatgagaaactgacctggttgtcccaagaagtag |
41653121 |
T |
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| Q |
111 |
caatgaggaaattggctttgggactgaaagaaagactggaaacagaatcagaaggtggtgaagtaacctcatgggatttgttaggattggtattcgtggc |
210 |
Q |
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| T |
41653120 |
caatgaggaaattggctttgggactgaaagaaagactggaaacagaatcagaaggtggtgaagtaacctcatgggatttgttaggattggtattcgtggc |
41653021 |
T |
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| Q |
211 |
tccgaaactcgacattgttcttcacttcttgatcaatgcagagaaagagagaggttagggtttg---------------------gaaagaaagaggttt |
289 |
Q |
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| T |
41653020 |
tccgaaactcgacattgttcttcacttcttgatcaatgcagagaaagagagaggttagggtttgaattgaattgaagtgaagaaagaaagaaagaggttt |
41652921 |
T |
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| Q |
290 |
gtgagagtatttatagctacgccatattaccaactctgcctacgttttacgcacttttcacgacggagcttttacgcggacaaccaactctgcctaactt |
389 |
Q |
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| T |
41652920 |
gtgagagtatttatagctacgccatattaccaactctgcctacgttttacgcacttttcacgaccgagcttttacgcggacaaccaactctgcctaactt |
41652821 |
T |
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| Q |
390 |
ttaagcaccaa |
400 |
Q |
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| T |
41652820 |
ttaagcaccaa |
41652810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 467
Target Start/End: Complemental strand, 41652794 - 41652754
Alignment:
| Q |
427 |
aacaaaactagtttattccaaccctatagatattactaaat |
467 |
Q |
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| T |
41652794 |
aacaaaactattttattcaaaccctatagatattactaaat |
41652754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 28820102 - 28820172
Alignment:
| Q |
89 |
acctggttgtcccaagaagtagcaatgaggaaattggctttgggactgaaagaaagactggaaacagaatc |
159 |
Q |
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| T |
28820102 |
acctggttgtcccaggaagtagcgacgaggaaattggctttaggactgaaagaaagactggaaatagaatc |
28820172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 1466278 - 1466350
Alignment:
| Q |
89 |
acctggttgtcccaagaagtagcaatgaggaaattggctttgggactgaaagaaagactggaaacagaatcag |
161 |
Q |
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| T |
1466278 |
acctgattatcccaagaagtagcaacaagtaagttggatttgggactgaaattgagactggaaacagaatcag |
1466350 |
T |
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