View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11389_low_1 (Length: 761)

Name: NF11389_low_1
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11389_low_1
NF11389_low_1
[»] chr2 (1 HSPs)
chr2 (1-752)||(19351470-19352219)


Alignment Details
Target: chr2 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 752
Target Start/End: Complemental strand, 19352219 - 19351470
Alignment:
Q  1 ttactgcagttttgatttgccgatttgtgctgaatatcctcaaaataaaccaggaaatattaaaccaattatgaatattaaaccaaacactatc-ttttc 99  Q
    |||| |||||||||||||||| ||||||||| | |||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |||||    
T  19352219 ttaccgcagttttgatttgccaatttgtgctcactatcctcaaaataaaccaggaaatgttaagccaattatggatattaaaccaaacactatccttttc 19352120  T
Q  100 tttaatgtcaaatattcggtaaacaaatgccaaggaaaaaatattcatgagttttcataatacaaacaaatacacaggnnnnnnngaatgaaataggacc 199  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||       |||||||||||||||    
T  19352119 tttaatgtcaaatattcggtaaacaaatggcaaggaaaaaatattcatgagttttcataatacaaacaaatacaaaggaaaaaa-gaatgaaataggacc 19352021  T
Q  200 aaacatgaccaaaacaacatttgaggaaaaagacaaagacagtccttctccataaacaaacctgctcaacaattacttgttctgtttttcataacaacac 299  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19352020 aaacatgagcaaaacaacatttgaggaaaaagacaaagacagtccttctccataaacaaacctgctcaacaattacttgttctgtttttcataaccacac 19351921  T
Q  300 caaaatgctttcaccaacttcaccataacaataacaataacaaccaaacctcaacacctctctctct--ttcattacatgccacgtcatcatttatttca 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  19351920 caaaatgctttcaccaacttcaccataacaataacaataacaaccaaacctcaacacctctctctctctttcattacatgccacgtcatcatttatttca 19351821  T
Q  398 ttcataattagtttcactgtannnnnnnnnnnnnnnnnnnacgtgaaaatgggaaacacaaattcctcacacaaccttttcataaccgtaaccgttttcg 497  Q
    |||||||||||||||||||||                   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19351820 ttcataattagtttcactgtaacaacaacacacaca----acgtgaaaatgggaaacacaaattcctcacacaaccttttcataaccgtaaccgttttcg 19351725  T
Q  498 ccgttaccgtcactgttttcttcattctctacttcatcctccgtcgtcgccgtttctctccgtcatcctcctccactgttagagtttctccggtcaccac 597  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  19351724 ccgttaccgtcaccgttttcttcattctctacttcatcctccgtcgtcgccgtttctctccgtcatcctcctccatttttagagtttctccggtcaccac 19351625  T
Q  598 tacttcgtccactacaacttctgtcgttgattctctcccgattttcaccttctcatccatcaaacgccgttcctccaccgtcgtctccggcgactgcgcc 697  Q
     |||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  19351624 gacttcgtccacttcatcttccgtcgttgattctctcccgattttcaccttctcatccatcaaacgccgttcctccaccgttgtctccggcgactgtgcc 19351525  T
Q  698 gtttgtttatcaaagttcgagcaaaacgatctcctccgtcttcttcctctctgct 752  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19351524 gtttgcttatcaaagttcgagcaaaacgatctcctccgtcttcttcctctctgct 19351470  T

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