View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_low_10 (Length: 471)
Name: NF11389_low_10
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 65 - 454
Target Start/End: Complemental strand, 32686666 - 32686277
Alignment:
| Q |
65 |
ccaatatagaagttgattgaccaaggatacaaacgaagccacgaataaaccgaccctcagaatccttggtaaggcttctacacgctaaaaggccattgac |
164 |
Q |
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| T |
32686666 |
ccaatatagaagttgattgaccaaggatacaaacgaagccacgaataaaccgaccctcagaatccttggtaaggcttctaaacgctaaaaggccattgac |
32686567 |
T |
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| Q |
165 |
actgtaatgagaaccaatatcaatgttaagatagaaagaggtggataccactttgcataaatttcaatatggttgttttcactataaagcaggggggttt |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32686566 |
actgtaatgagaaccaatatcaatgttaagatagaaagaggtggataccactttgcataaatttcaatatggttgttttcactataaagcagggggtttt |
32686467 |
T |
|
| Q |
265 |
tgcaacagatggtgatggaccaaagcaagctggctgtgtaaagatgccaaaaattgtcaggatcaaaggttgttcctgaaaaaactagttgatttgtttc |
364 |
Q |
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| T |
32686466 |
tgcaacagatggtgatggaccaaagcaagctggctgtgtaaagatgccaaaaattgtcaggatcaaaggttgatcctgaaaaaactagttgatttgtttc |
32686367 |
T |
|
| Q |
365 |
tagacatagcatgagtcatgataccaaataccattggccaatgccactgatccgatccgaaccaactttgggagtttttaagttaaatga |
454 |
Q |
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| T |
32686366 |
tagacatagcatgagtcatgataccaaataccattggccaatgccactgatccgatccgaaccaactttgggagtttttaagttaaatga |
32686277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 32686761 - 32686697
Alignment:
| Q |
1 |
ctacaataaggaatctagacccacataaatagattgcagggacaaatacttggttcaggctaatc |
65 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32686761 |
ctacaataaggaatctagacccacataaatagattgcagggacaaatacttggttcaggctaatc |
32686697 |
T |
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