View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11389_low_12 (Length: 462)

Name: NF11389_low_12
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11389_low_12
NF11389_low_12
[»] chr1 (1 HSPs)
chr1 (1-452)||(45845979-45846430)
[»] scaffold0039 (1 HSPs)
scaffold0039 (1-448)||(23687-24134)
[»] chr5 (2 HSPs)
chr5 (1-101)||(2989823-2989923)
chr5 (247-379)||(2990069-2990201)


Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 45846430 - 45845979
Alignment:
Q  1 ttgcgaacattaccggttactcaatcctctctggtctcgccgttggaatggaacctatttgtggacaagcttttggtgccaaaagattcactctccttgg 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45846430 ttgcgaacattaccggttactcaatcctctccggtctcgccgttggaatggaacctatttgtggacaagcttttggtgcaaaaagattcactctccttgg 45846331  T
Q  101 tctatgtttacaaaaaaccattctcttgctactcttaacttctatccctatttcattactttggctttacacaaaacatatccttcttttatgtggccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45846330 tctatgtttacaaaaaaccattctcttgctactcttaacttctatccctatttcattactttggctttacacaaaacatatccttcttttatgtggccaa 45846231  T
Q  201 gaagaagatatagctacacaagctcaaatctatcttctatattccattcctgatctcatagcacaatcgtttttacaccctttaagaatttaccttagaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45846230 gaagaagatatagctacacaagctcaaatctatcttctatattccattcctgatctcttagcacaatcgtttttacaccctttaagaatttaccttagaa 45846131  T
Q  301 gccaatccattactctgcctctcacactttgtgctactttagcaatttttcttcacattcccataaactattttcttgtttctcacctcaatatgggaat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45846130 gccaatccattactctgcctctcacactttgtgctactttagcaatttttcttcacattcccataaactattttcttgtttctcacctcaatatgggaat 45846031  T
Q  401 caaaggtgtagctttaagtggggtgtggacaaatttcaaccttgttgcatct 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45846030 caaaggtgtagctttaagtggggtgtggacaaatttcaaccttgttgcatct 45845979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 23687 - 24134
Alignment:
Q  1 ttgcgaacattaccggttactcaatcctctctggtctcgccgttggaatggaacctatttgtggacaagcttttggtgccaaaagattcactctccttgg 100  Q
    |||| ||||| || |||||||| || || |||||||| || ||||| |||||||| |||||||| |||||||||||||| |||| ||||||||| |||||    
T  23687 ttgccaacatcactggttactccattctttctggtcttgctgttggtatggaaccaatttgtggtcaagcttttggtgctaaaaaattcactcttcttgg 23786  T
Q  101 tctatgtttacaaaaaaccattctcttgctactcttaacttctatccctatttcattactttggctttacacaaaacatatccttcttttatgtggccaa 200  Q
    ||| ||| | |||| ||||||||| ||||| || ||   ||| || || || || ||    ||||||||||  ||| | || ||| | || | |  ||||    
T  23787 tctttgtcttcaaagaaccattcttttgcttcttttggtttcaataccaatatctttttcatggctttacatgaaaaaaatgcttttgttttttaaccaa 23886  T
Q  201 gaagaagatatagctacacaagctcaaatctatcttctatattccattcctgatctcatagcacaatcgtttttacaccctttaagaatttaccttagaa 300  Q
    || ||||| ||||| |||   |||||||  ||| |||||||||| ||||||||||| || || ||||| ||| |||||||||| ||||||||| | || |    
T  23887 gatgaagaaatagcaacaatggctcaaacttatattctatattcaattcctgatcttattgctcaatcctttatacaccctttgagaatttacttaagga 23986  T
Q  301 gccaatccattactctgcctctcacactttgtgctactttagcaatttttcttcacattcccataaactattttcttgtttctcacctcaatatgggaat 400  Q
      |||||||||||||| ||||| ||||||||||| |||||  ||||  |||||||||| || ||||| ||||||||||||    | || ||| |||| ||    
T  23987 ctcaatccattactcttcctcttacactttgtgcaactttttcaatccttcttcacataccaataaattattttcttgttatatatcttaatttgggtat 24086  T
Q  401 caaaggtgtagctttaagtggggtgtggacaaatttcaaccttgttgc 448  Q
     ||||| || |||||||||||||| |||||||||||||||||||||||    
T  24087 aaaaggagttgctttaagtggggtatggacaaatttcaaccttgttgc 24134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 2989823 - 2989923
Alignment:
Q  1 ttgcgaacattaccggttactcaatcctctctggtctcgccgttggaatggaacctatttgtggacaagcttttggtgccaaaagattcactctccttgg 100  Q
    |||| ||||| || |||||||| || ||||||||||| ||| | |||||||||||||||||||| |||||||||||||| ||||||||||  ||||||||    
T  2989823 ttgcaaacatcacaggttactccattctctctggtcttgccatgggaatggaacctatttgtggtcaagcttttggtgctaaaagattcaaactccttgg 2989922  T
Q  101 t 101  Q
    |    
T  2989923 t 2989923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 379
Target Start/End: Original strand, 2990069 - 2990201
Alignment:
Q  247 ttcctgatctcatagcacaatcgtttttacaccctttaagaatttaccttagaagccaatccattactctgcctctcacactttgtgctactttagcaat 346  Q
    ||||||||||  |||||||||| ||  |||||||||| ||||| || ||| ||||||||||||| || || ||| | |||    ||||||||||  | ||    
T  2990069 ttcctgatcttgtagcacaatcattgctacaccctttgagaatctatcttcgaagccaatccataacacttcctttaacatacagtgctactttgtctat 2990168  T
Q  347 ttttcttcacattcccataaactattttcttgt 379  Q
    | ||||||||||||| |||||||||||||||||    
T  2990169 tcttcttcacattcctataaactattttcttgt 2990201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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