View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11389_low_16 (Length: 394)
Name: NF11389_low_16
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 380
Target Start/End: Original strand, 32467911 - 32468278
Alignment:
| Q |
13 |
aggcaaaactataaatacaaaagaaacccaaaatcattaaaccacacttatacatgtcaacggttcttaaaaataattttttacaagaatnnnnnnnnnn |
112 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32467911 |
aggcaaaactataaatccaaaagaaacccaaaatcattaaaccacacctatacatgtcaacggttcttaaaaataattttttacaagaataaaaaaaaat |
32468010 |
T |
|
| Q |
113 |
cattaagtaaaaaattgtcacataaaatcaagatggttggtgctgtttagcttcatttgattgtttagtgaatgtgacttagagaaagaagaagatgatg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32468011 |
-attaagtaaaaaattgtcacataaaatcaagatggttggtgctgtttaacttcatttgattgtttggtgaatgtgacttagagaaagaagaagatgatg |
32468109 |
T |
|
| Q |
213 |
agtcacaaaggttatgaggtgaaaataatgagaatggagtatcattcaaggaagttgatggg-ttttttatgagcatagttgtgtagtgttgttttgaga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32468110 |
agtcacaaaggttatgaggtgaaaataatgagaatggagtatcattcaaggaagttgatgggtttttttatgagcatagttgtgtagtgttgttttgaga |
32468209 |
T |
|
| Q |
312 |
aatgtgagttcacttcctatgaatttgtttatttgctatattatttccctttgtttttcagttctcttc |
380 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32468210 |
aatgtgagttcacttcctatggatttgtttatttgctctattatttccctttgtttttcagttctcttc |
32468278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University