View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11389_low_2 (Length: 649)
Name: NF11389_low_2
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 23 - 635
Target Start/End: Complemental strand, 15330074 - 15329462
Alignment:
| Q |
23 |
tcccgacttggtgtcatattaattatagttataaatgatatgataaaggacatcatattcaaacctgaaaacatcatgaaatcaaatctaggcatgacag |
122 |
Q |
| |
|
|||||| ||||||||||| ||||||| |||| |||||| |||| |||||| | |||||||||| |||||||| || |||||||| | ||| || || || |
|
|
| T |
15330074 |
tcccgagttggtgtcataataattattgttagaaatgacatgaaaaaggaaaacatattcaaaactgaaaacgtcgtgaaatcagttttagacaagatag |
15329975 |
T |
|
| Q |
123 |
atttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaagtccgccagggggact |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
15329974 |
atttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccaccagggggact |
15329875 |
T |
|
| Q |
223 |
cagagttgattcgtacatggtagttgcaataagagtcgcaactactaaccaagtgttacgatcctcccctgttatgtcagttctaccacgaaagatatga |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| | || | | ||| |
|
|
| T |
15329874 |
cagagttgattcgtacatggtagttgcaataagagtcgcaactactaaccaagcgttacgttcctcccctgttatgttagttctactaaaaaggttctga |
15329775 |
T |
|
| Q |
323 |
gtgtagaatttatacataagtgtggtctttgacctaagccaatgtgcaggtgagggagcatatatgacttctaagcttggttttgatccagcactgaata |
422 |
Q |
| |
|
| | ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15329774 |
gagaagaatttatccataagtgtggtctttgacctaagccaatgtgtaggtgagggagcatctgtgacttctaagcttggttttgacccagcactgaata |
15329675 |
T |
|
| Q |
423 |
atatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttctgtgcaaatatattttagtctttaccaacgatagaag |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15329674 |
atatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttttgtgcaaatttattttagtctttaccaacgatagaag |
15329575 |
T |
|
| Q |
523 |
ctcctgcactaccagtggttcactacttagtgctgcaatgtgtaaaatagtgtttcctgcctcatccttctcgtttaatattctactctccagctcttta |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| | |||||||| |
|
|
| T |
15329574 |
ctcctgcactaccagtggttcactacttagtgctgcaatgtgtaaaattgtgtttcctgcctcatccctctcgtttaatattctactcttccgctcttta |
15329475 |
T |
|
| Q |
623 |
gcgccactccgtt |
635 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
15329474 |
gcgcccctccgtt |
15329462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 23 - 635
Target Start/End: Complemental strand, 15510443 - 15509831
Alignment:
| Q |
23 |
tcccgacttggtgtcatattaattatagttataaatgatatgataaaggacatcatattcaaacctgaaaacatcatgaaatcaaatctaggcatgacag |
122 |
Q |
| |
|
|||||| ||||||||||| ||||||| |||| |||||| |||| |||||| | |||||||||| |||||||| || |||||||| | ||| || || || |
|
|
| T |
15510443 |
tcccgagttggtgtcataataattattgttagaaatgacatgaaaaaggaaaacatattcaaaactgaaaacgtcgtgaaatcagttttagacaagatag |
15510344 |
T |
|
| Q |
123 |
atttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaagtccgccagggggact |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
15510343 |
atttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccaccagggggact |
15510244 |
T |
|
| Q |
223 |
cagagttgattcgtacatggtagttgcaataagagtcgcaactactaaccaagtgttacgatcctcccctgttatgtcagttctaccacgaaagatatga |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| | || | | ||| |
|
|
| T |
15510243 |
cagagttgattcgtacatggtagttgcaataagagtcgcaactactaaccaagcgttacgttcctcccctgttatgttagttctactaaaaaggttctga |
15510144 |
T |
|
| Q |
323 |
gtgtagaatttatacataagtgtggtctttgacctaagccaatgtgcaggtgagggagcatatatgacttctaagcttggttttgatccagcactgaata |
422 |
Q |
| |
|
| | ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15510143 |
gagaagaatttatccataagtgtggtctttgacctaagccaatgtgtaggtgagggagcatctgtgacttctaagcttggttttgacccagcactgaata |
15510044 |
T |
|
| Q |
423 |
atatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttctgtgcaaatatattttagtctttaccaacgatagaag |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15510043 |
atatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttttgtgcaaatttattttagtctttaccaacgatagaag |
15509944 |
T |
|
| Q |
523 |
ctcctgcactaccagtggttcactacttagtgctgcaatgtgtaaaatagtgtttcctgcctcatccttctcgtttaatattctactctccagctcttta |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| | |||||||| |
|
|
| T |
15509943 |
ctcctgcactaccagtggttcactacttagtgctgcaatgtgtaaaattgtgtttcctgcctcatccctctcgtttaatattctactcttccgctcttta |
15509844 |
T |
|
| Q |
623 |
gcgccactccgtt |
635 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
15509843 |
gcgcccctccgtt |
15509831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 16 - 638
Target Start/End: Complemental strand, 28866175 - 28865556
Alignment:
| Q |
16 |
accttgatcccgacttggtgtcatattaattatagttataaatgatatgataaaggacatcatattcaaacctgaaaacatcatgaaatcaaatctaggc |
115 |
Q |
| |
|
||||||| |||||||||| ||||| ||| ||| |||| |||||||| || |||||| |||||||||| |||||||| | |||||||| | ||| | |
|
|
| T |
28866175 |
accttgacgccgacttggtatcataataagtattgttagaaatgatacgaaaaaggaagccatattcaaaactgaaaacgacgtgaaatcatttatagac |
28866076 |
T |
|
| Q |
116 |
atgacagatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaagtccgccag |
215 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| |
|
|
| T |
28866075 |
aagacagatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagaactaatctgataaaatccaccag |
28865976 |
T |
|
| Q |
216 |
ggggactcagagttgattcgtacatggtagttgcaataagagtcgcaactactaaccaagtgttacgatcctcccctgttatgtcagttctaccacgaaa |
315 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
28865975 |
ggggactcagagttgattcgaacatggtagttgcaataagagtcgcaactactaaccaagtgttacgttcctcccctgttatgtcagttctac---gaag |
28865879 |
T |
|
| Q |
316 |
gatatgagtgtagaatttatacataagtgtggtctttgacctaagccaatgtgcaggtgagggagcatatatgacttctaagcttggttttgatccagca |
415 |
Q |
| |
|
| | |||||||||||||||| || || |||||||||||||||||||||||||||| ||| |||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
28865878 |
gttctgagtgtagaatttatccaaaattgtggtctttgacctaagccaatgtgcacgtgtgggagcatctgtgacttctaagcttggttttgatccagca |
28865779 |
T |
|
| Q |
416 |
ctgaataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttctgtgcaaatatattttagtctttaccaacg |
515 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||| |
|
|
| T |
28865778 |
ctgaataatatactcttaatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttttgcgcaaatttattttagtctttaccaacg |
28865679 |
T |
|
| Q |
516 |
atagaagctcctgcactaccagtggttcactacttagtgctgcaatgtgtaaaatagtgtttcctgcctcatccttctcgtttaatattctactctccag |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28865678 |
atagaagctcctgcactaccagtggttcactacttagtgctgcaacatgtaaaatactgtttcctgcctcatccttctcgtttaatattctactctccag |
28865579 |
T |
|
| Q |
616 |
ctctttagcgccactccgttcat |
638 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
28865578 |
ctcttcagcgccactccgttcat |
28865556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 118 - 279
Target Start/End: Complemental strand, 14727884 - 14727723
Alignment:
| Q |
118 |
gacagatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaagtccgccaggg |
217 |
Q |
| |
|
||||||| | |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||| |
|
|
| T |
14727884 |
gacagatcttccaacattttttggggtggaaatagtagaattggaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccaccaggg |
14727785 |
T |
|
| Q |
218 |
ggactcagagttgattcgtacatggtagttgcaataagagtcgcaactactaaccaagtgtt |
279 |
Q |
| |
|
||||||| | ||||| |||||||| ||||||||||||||| || |||| |||||| |||| |
|
|
| T |
14727784 |
ggactcaaaactgattggtacatggcagttgcaataagagtggcgactatcaaccaaatgtt |
14727723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 125 - 279
Target Start/End: Original strand, 28693130 - 28693285
Alignment:
| Q |
125 |
ttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcact-aatctgataaagtccgccagggggactc |
223 |
Q |
| |
|
|||||||||||| | |||||||||||||||| || ||||||||||||||||||||| ||||| ||||||| ||||||||||| ||| |||||||| || |
|
|
| T |
28693130 |
ttcccaacatttgctggggtagaaatagtagagtttgaggaagtgatgttcaaattactgtcaccagcactaaatctgataaattccaccagggggtgtc |
28693229 |
T |
|
| Q |
224 |
agagttgattcgtacatggtagttgcaataagagtcgcaactactaaccaagtgtt |
279 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |||| ||||||| |||| |
|
|
| T |
28693230 |
agagctgattcaaacatggtagttgcaataagagtcgcgactattaaccaaatgtt |
28693285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 29552918 - 29552811
Alignment:
| Q |
115 |
catgacagatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaagtccgcca |
214 |
Q |
| |
|
|||||| ||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| |||||||| ||| ||| |
|
|
| T |
29552918 |
catgaccgattttccagcatttcctagggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccacca |
29552819 |
T |
|
| Q |
215 |
gggggact |
222 |
Q |
| |
|
|||||||| |
|
|
| T |
29552818 |
gggggact |
29552811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 122 - 282
Target Start/End: Complemental strand, 30649008 - 30648848
Alignment:
| Q |
122 |
gatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaagtccgccagggggac |
221 |
Q |
| |
|
||||||||| ||||| | ||| |||||| ||| |||||||||||||||||||| ||| ||||| ||||||||| |||||||| ||| |||||||||| |
|
|
| T |
30649008 |
gatttcccagcatttcctggggcagaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaattccaccagggggac |
30648909 |
T |
|
| Q |
222 |
tcagagttgattcgtacatggtagttgcaataagagtcgcaactactaaccaagtgttacg |
282 |
Q |
| |
|
||| ||||| || |||| ||| |||| |||||||||||||| |||||||||||||| |
|
|
| T |
30648908 |
tcaatcctgattgatagatggcagtcgcaacaagagtcgcaactatcaaccaagtgttacg |
30648848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 388 - 484
Target Start/End: Complemental strand, 14727605 - 14727509
Alignment:
| Q |
388 |
gacttctaagcttggttttgatccagcactgaataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattcttt |
484 |
Q |
| |
|
|||||||| ||| |||||| |||| |||| |||||||||||||| |||||||| |||||| |||||| ||||||||||| ||||||||||||||| |
|
|
| T |
14727605 |
gacttctatgctatgttttgctccaacacttaataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctccaaattcttt |
14727509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 119 - 282
Target Start/End: Complemental strand, 26089356 - 26089190
Alignment:
| Q |
119 |
acagatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatc---agcactaatctgataaagtccgccag |
215 |
Q |
| |
|
|||||||||||| ||||| | | |||||||||||||||||||||||||||||||||| | |||| |||| |||||||| |||||||| ||| | || |
|
|
| T |
26089356 |
acagatttcccagcatttcctggagtagaaatagtagaattggaggaagtgatgttcacaccattgccatcactagcactaacctgataaattccactag |
26089257 |
T |
|
| Q |
216 |
ggggactcagagttgattcgtacatggtagttgcaataagagtcgcaactactaaccaagtgttacg |
282 |
Q |
| |
|
||||||||| ||||| || || | |||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
26089256 |
ggggactcaatcctgattgataaatcgcagttgcaacaagagtcgcaactatcaaccaactgttacg |
26089190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 387 - 474
Target Start/End: Complemental strand, 30648743 - 30648656
Alignment:
| Q |
387 |
tgacttctaagcttggttttgatccagcactgaataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctc |
474 |
Q |
| |
|
|||||||| |||| ||||||| |||| |||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||| ||||| |
|
|
| T |
30648743 |
tgacttctgagctaggttttgttccaacacttaataatatactcttgatctctggcgtgcttgctatgtctaatgcggttttgttctc |
30648656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 149 - 274
Target Start/End: Complemental strand, 26090318 - 26090197
Alignment:
| Q |
149 |
atagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaagtccgccagggggactcagagttgattcgtacatggtagttg |
248 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||| || | ||||||||||||| ||| ||| ||||| ||| || || |||||||||| || |
|
|
| T |
26090318 |
atagtagaattgaaggaagtgatgttccaattattgtcaccaaccctaatctgataaactccaccatggggagtcaaag----ctcatacatggtagatg |
26090223 |
T |
|
| Q |
249 |
caataagagtcgcaactactaaccaa |
274 |
Q |
| |
|
||||||||| ||| |||| ||||||| |
|
|
| T |
26090222 |
caataagagacgcgactattaaccaa |
26090197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 391 - 484
Target Start/End: Complemental strand, 26089102 - 26089009
Alignment:
| Q |
391 |
ttctaagcttggttttgatccagcactgaataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattcttt |
484 |
Q |
| |
|
||||| ||| ||||||| |||| ||| |||||||||||||| | |||||| ||||||||||||| ||||| ||||| ||||||| ||||||| |
|
|
| T |
26089102 |
ttctatgctaggttttgctccaaaacttaataatatactcttcacatctggagtgcttgctatgtctaatgcggttttgttctccagattcttt |
26089009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 122 - 279
Target Start/End: Complemental strand, 27714465 - 27714308
Alignment:
| Q |
122 |
gatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaagtccgccagggggac |
221 |
Q |
| |
|
||||||||| ||||| | ||||||| || |||||||| |||||||| ||||| | |||||||||| |||| ||| |||||||| ||| ||| |||| |
|
|
| T |
27714465 |
gatttcccagcatttctaggggtagacattgtagaattagaggaagtaatgttgacattattgtcactagcattaacctgataaactccaccaacgggag |
27714366 |
T |
|
| Q |
222 |
tcagagttgattcgtacatggtagttgcaataagagtcgcaactactaaccaagtgtt |
279 |
Q |
| |
|
||| | ||||| ||||||| ||||||| |||||||||||||| | ||||||||| |
|
|
| T |
27714365 |
tcaatgctgattgatacatggctgttgcaacaagagtcgcaactatcatccaagtgtt |
27714308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 24509424 - 24509349
Alignment:
| Q |
145 |
agaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaagtccgccaggggga |
220 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||| |||| |||| || | ||||||| ||||||||||||| |
|
|
| T |
24509424 |
agaaatagtagaatcggaggaagtggtgttcaaatttttgttggtagcattagtttgataaaatccgccaggggga |
24509349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 514
Target Start/End: Original strand, 31073809 - 31073922
Alignment:
| Q |
401 |
ggttttgatccagcactgaataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttctgtgcaaatatattt |
500 |
Q |
| |
|
||||||| ||||||||| | |||||||| ||||||||||| | || ||||||||| |||| |||| ||||| |||||||| | ||||| ||| | |
|
|
| T |
31073809 |
ggttttgctccagcacttagtaatatacccttgatctctgcactggctgctatgtctaatgttgttgagttctctgaattctttgcattcaaatttatct |
31073908 |
T |
|
| Q |
501 |
tagtctttaccaac |
514 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
31073909 |
tagtctttaccaac |
31073922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 3e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 118 - 484
Target Start/End: Original strand, 26086371 - 26086740
Alignment:
| Q |
118 |
gacagatttcccaacattttttaggg---tagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaagtccgcca |
214 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||| || |||||| ||| ||| |
|
|
| T |
26086371 |
gacagatttcccaacatttccttgggtactagaaatagtagaattggaggaagtgatgttcaaactattgtcaccggcactactcggataaactccacca |
26086470 |
T |
|
| Q |
215 |
gggggactcagagttgattcgtacatggtagttgcaataagagtcgcaactactaaccaagtgttacgatcctcccctgttatgtcagttctaccacgaa |
314 |
Q |
| |
|
|||||| |||||| |||||| ||||||||||| |||||||||| || |||| ||||||| |||| || | |||| |||| |||||| ||||| ||||| |
|
|
| T |
26086471 |
gggggagtcagagctgattcatacatggtagtcgcaataagagctgcgactattaaccaaatgttgcgttgctcctctgtcatgtcacttctaatacgaa |
26086570 |
T |
|
| Q |
315 |
agatatgagtgtagaatttatacataagtgtggtctttgacctaagccaatgtgcaggtgagggagcatatatgacttctaagcttggttttgatccagc |
414 |
Q |
| |
|
| ||| | | |||||||||||| ||| |||| ||||| ||| ||||||| ||| |||||||| |||||| | ||| | ||||| ||| || |
|
|
| T |
26086571 |
ttgtctgaattaacaatttatacatagttgttttcttcgaccttagcatatgtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgc |
26086670 |
T |
|
| Q |
415 |
actgaataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattcttt |
484 |
Q |
| |
|
|| ||||||||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
26086671 |
ccttaataatatactcttgatctttggagtgcttgctatgtctaatgctgttttgttctccaaattcttt |
26086740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 387 - 514
Target Start/End: Original strand, 6611094 - 6611221
Alignment:
| Q |
387 |
tgacttctaagcttggttttgatccagcactgaataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttct |
486 |
Q |
| |
|
||||||||||||| ||||||| |||| | |||||||| |||||||||||| |||| ||||||||||||| ||||||||||| ||||||| ||| || | |
|
|
| T |
6611094 |
tgacttctaagctaggttttgctccaactctgaataacatactcttgatccgtggagtgcttgctatgtctaatgctgttttgctctccaagttcattgt |
6611193 |
T |
|
| Q |
487 |
gtgcaaatatattttagtctttaccaac |
514 |
Q |
| |
|
|| ||||| ||||||||||||||||||| |
|
|
| T |
6611194 |
gttcaaatttattttagtctttaccaac |
6611221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 344 - 483
Target Start/End: Original strand, 17292819 - 17292958
Alignment:
| Q |
344 |
gtggtctttgacctaagccaatgtgcaggtgagggagcatatatgacttctaagcttggttttgatccagcactgaataatatactcttgatctctggaa |
443 |
Q |
| |
|
||||||||||| || || ||||||| ||| |||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||| || |
|
|
| T |
17292819 |
gtggtctttgatcttagtttatgtgcaagtgtgggagcatccatgacttctaagctaggttttgatccagcactaaataagatactcttgttctctagag |
17292918 |
T |
|
| Q |
444 |
tgcttgctatgtccaatgctgttttattctccaaattctt |
483 |
Q |
| |
|
|| || ||||| ||||||||||| |||||||||||||| |
|
|
| T |
17292919 |
tggcggcaatgtctaatgctgttttgttctccaaattctt |
17292958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 112 - 282
Target Start/End: Original strand, 6610834 - 6611007
Alignment:
| Q |
112 |
aggcatgacagatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcat---cagcactaatctgataaagt |
208 |
Q |
| |
|
||||||||| ||||||||| |||||| | | ||||||||||||||||| |||||||||||||||| | |||||||| || |||||| |||||||| | |
|
|
| T |
6610834 |
aggcatgaccgatttcccagcattttctggagtagaaatagtagaatttgaggaagtgatgttcacaccattgtcatcaccaacactaacctgataaatt |
6610933 |
T |
|
| Q |
209 |
ccgccagggggactcagagttgattcgtacatggtagttgcaataagagtcgcaactactaaccaagtgttacg |
282 |
Q |
| |
|
|| ||||| ||||||| ||||| || |||| |||||||| |||||||||| || |||||||||||||| |
|
|
| T |
6610934 |
ccaccaggaggactcaatcctgattgatagatggcagttgcaacgagagtcgcaattatcaaccaagtgttacg |
6611007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 122 - 279
Target Start/End: Original strand, 17292597 - 17292754
Alignment:
| Q |
122 |
gatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaagtccgccagggggac |
221 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||| |||||||| |||||| |||||||||| || ||||| |||||||| || ||| |||| |
|
|
| T |
17292597 |
gatttcccaacattttttggggtagaaattgtagaattgaaggaagtgttgttcacattattgtcactagtactaacctgataaacaccaccaacgggag |
17292696 |
T |
|
| Q |
222 |
tcagagttgattcgtacatggtagttgcaataagagtcgcaactactaaccaagtgtt |
279 |
Q |
| |
|
| || ||||||| || ||| ||||||| ||||||||||| || ||||||||||| |
|
|
| T |
17292697 |
ttagcgttgattgataggtggctgttgcaacaagagtcgcaattatcaaccaagtgtt |
17292754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 604
Target Start/End: Original strand, 6611950 - 6612008
Alignment:
| Q |
546 |
tacttagtgctgcaatgtgtaaaatagtgtttcctgcctcatccttctcgtttaatatt |
604 |
Q |
| |
|
|||||||||||| ||| || ||||| ||||| |||||||||||| ||| |||||||||| |
|
|
| T |
6611950 |
tacttagtgctgaaatatgcaaaatggtgttgcctgcctcatccctcttgtttaatatt |
6612008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 142 - 279
Target Start/End: Complemental strand, 4820013 - 4819876
Alignment:
| Q |
142 |
ggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaagtccgccagggggactcagagttgattcgtacatg |
241 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| || ||||| |||| ||| |||||||| ||| || || ||| || | ||||| | || |
|
|
| T |
4820013 |
ggtagaaatagtagaattggtggacgtgatgttcaaactactgtcactagcattaacctgataaactccacctggtggagacattgctgattgaaaggtg |
4819914 |
T |
|
| Q |
242 |
gtagttgcaataagagtcgcaactactaaccaagtgtt |
279 |
Q |
| |
|
| |||||||| |||||||||||||| ||||||||||| |
|
|
| T |
4819913 |
gcagttgcaacaagagtcgcaactatcaaccaagtgtt |
4819876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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