View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_low_21 (Length: 360)
Name: NF11389_low_21
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_low_21 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 9 - 360
Target Start/End: Original strand, 23597709 - 23598064
Alignment:
| Q |
9 |
gatggacatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtgttg |
108 |
Q |
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| T |
23597709 |
gatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtgctg |
23597808 |
T |
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| Q |
109 |
gtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtggtgctggccccaaaattgaggaagttgattaagcggaactttt |
208 |
Q |
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| T |
23597809 |
gtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtggtgctggccccaaaattgaggaagttgattaagcggaactttt |
23597908 |
T |
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| Q |
209 |
gtaatggaatttatgtgtggttcaggattttgcaaggactcttttgaaatagcatcctagtaatatgtatgtgttttggtttaagtagtacagcgagctc |
308 |
Q |
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| T |
23597909 |
gtaatgggatttatgtgtggttcaggattttgcaaggactcttttgaaatagcatcctagtaatatgtatgtgttttggtttagctagtacagcgagctc |
23598008 |
T |
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| Q |
309 |
tatcttatttcaatgtacttttccc----tttaatgttaacaatggtttatgttcc |
360 |
Q |
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| T |
23598009 |
tgtcttatttcaatgtacttttccctttatttaatgttaacaatggtttaagttcc |
23598064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 23588857 - 23589087
Alignment:
| Q |
9 |
gatggacatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtgttg |
108 |
Q |
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| T |
23588857 |
gatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttgcaaccctatcattgcaaggatgtatcaaggtgctg |
23588956 |
T |
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| Q |
109 |
gtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtggtgctggccccaaaattgaggaagttgattaagcggaactttt |
208 |
Q |
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| T |
23588957 |
gtggagatgctggaggagccatggatgaggatggtcctacagctggcagtggaagcggtgctggccccaaaattgaggaagttgattaagctaaactttg |
23589056 |
T |
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| Q |
209 |
gtaatggaatttatgtgtggttcaggatttt |
239 |
Q |
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| T |
23589057 |
ttcatgggattgatgggtggttcatgatttt |
23589087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 39984678 - 39984594
Alignment:
| Q |
21 |
cttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
105 |
Q |
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| T |
39984678 |
cttgcagaggctgatgagtttgaggacaagatgaaggaacttgaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
39984594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 8018554 - 8018633
Alignment:
| Q |
26 |
agaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
105 |
Q |
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| T |
8018554 |
agaggctgatgagtttgaagataagatgaaggaacttgagagcctttgcaacccaatcattgccaagatgtatcaaggtg |
8018633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 8101687 - 8101615
Alignment:
| Q |
33 |
gatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
105 |
Q |
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| T |
8101687 |
gatgagtttgaagacaagatgaaggagcttgagacaatctgtaacccaatcattgcaaagatgtaccaaggtg |
8101615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 17706804 - 17706893
Alignment:
| Q |
16 |
atcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
105 |
Q |
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| T |
17706804 |
atcagcttgcagaggcagatgagtttgaggacaagatgaaggaaccagaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
17706893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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