View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_low_25 (Length: 312)
Name: NF11389_low_25
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 50 - 301
Target Start/End: Complemental strand, 30849197 - 30848946
Alignment:
| Q |
50 |
gcttccaaagactcttccattctcatacacaagaacaagtttcacaaacttggtcgtaatctttctgatgcaatcacatctttcaaaaacacactcaacc |
149 |
Q |
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| T |
30849197 |
gcttccaaagactcttccattctcatacacaagaacaagtttcacaaacttggtcgtaatctttctgatgcaatcacatctttcaaaaacacactcaacc |
30849098 |
T |
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| Q |
150 |
ttaataatactaacaatcctgagtctcctccttcttctaagaaacttgcttgggcttctgttcttcgtaatcttactcaactttatcctggaactcagct |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
30849097 |
ttaataatactaacaatcctgagtctcctccttcttctaagaaacttgcttgggcttctgttcttcgtaatcttactcaactctaccctggaactcagct |
30848998 |
T |
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| Q |
250 |
tcctgataatcttatctccaccattcgtaatcattacaattctcttcctctc |
301 |
Q |
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| T |
30848997 |
tcctgataatcttatctccaccattcgtaatcattacaattctcttcctctc |
30848946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 26561534 - 26561473
Alignment:
| Q |
218 |
aatcttactcaactttatcctggaactcagcttcctgataatcttatctccaccattcgtaa |
279 |
Q |
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| T |
26561534 |
aatcttactcagctttatcctggtagccagcttcctgaaaagcttatgtccaacattcgtaa |
26561473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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