View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_low_27 (Length: 287)
Name: NF11389_low_27
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 3890651 - 3890419
Alignment:
| Q |
1 |
cctacatctcttctctataagataaggcagccatttaaaacatgggttacttcaaaaaccaccacaaccagccctcctaaagtcctttcattgaaccact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3890651 |
cctacatctcttctctataagataaggcagccatttaaaacatgggttacttcaaaaaccaccacaaccagccctcctaaagtcctttcattgaaccact |
3890552 |
T |
|
| Q |
101 |
catctgtcgaggttgaaaatccatgcaaattgctttaaaatcccttcaatctaaccccttttttgtggtgagaccaactcacatcaacccaataccttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3890551 |
catctgtcgaggttgaaaatccatgcaaattgctttaaaatcccttcaatctaaccccttttttgtggtgagaccaactcacatcaacccaataccttca |
3890452 |
T |
|
| Q |
201 |
catgcatataggagaaagatcattgcaagtgtt |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3890451 |
catgcatataggagaaagatcattgcaagtgtt |
3890419 |
T |
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