View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11389_low_30 (Length: 271)
Name: NF11389_low_30
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_low_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 10352460 - 10352204
Alignment:
| Q |
1 |
ctttcaccacgtttttcttctctatcatcttcagaaacacaaccaaattctattgtgtgagttaattaaaattatgggttagatatggtctttaattttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10352460 |
ctttcaccacgtttttcttctctatcatcttcagaaacacaaccaaattctattgtgtgagttaattaaaattatgggttagatatggtctttaattttt |
10352361 |
T |
|
| Q |
101 |
atgtcttggttctgctaataaaaatcaagttacagaaagcccaggctgaaactcagagtctagattattattttgtatttattttaatttcttatagaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10352360 |
atgtcttggttctgctaataaaaatcaagttacagaaagcccaggctgaaactgagagtctagattattattttgtatttattttaatttcttatagaaa |
10352261 |
T |
|
| Q |
201 |
acaaatcacatcattctctacaacacaaatcatccaagaacaacaactcttttcctc |
257 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10352260 |
acaaatcacatcattctctacagcacaaatcatccaagaacaacaactcttttcctc |
10352204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 36049877 - 36049773
Alignment:
| Q |
23 |
tatcatcttcagaaacacaaccaaattctattgtgtgagttaattaaaattat--gggttagatatggtctttaatttttatgtcttggttctgctaata |
120 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||| | ||| |||||| |||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
36049877 |
tatcatctccaaaaacacaaccaaattctattgtgtgagttaattaagaatatgggggttaaatatggtctttaatctttatgtcttggttctgcttata |
36049778 |
T |
|
| Q |
121 |
aaaat |
125 |
Q |
| |
|
||||| |
|
|
| T |
36049777 |
aaaat |
36049773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 38600387 - 38600306
Alignment:
| Q |
63 |
taattaaaattatggg-ttagatatggtctttaatttttatgtcttggttctgctaataaaaatcaagttacagaaagccca |
143 |
Q |
| |
|
||||||| |||||||| || ||||||||||||||| ||| |||||||||||| ||||| |||||||||| |||||||||||| |
|
|
| T |
38600387 |
taattaagattatggggttggatatggtctttaatctttgtgtcttggttctactaatcaaaatcaagtcacagaaagccca |
38600306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 38628204 - 38628149
Alignment:
| Q |
88 |
gtctttaatttttatgtcttggttctgctaataaaaatcaagttacagaaagccca |
143 |
Q |
| |
|
||||||||| ||| |||||||||||| ||||| |||||||||| |||||||||||| |
|
|
| T |
38628204 |
gtctttaatctttgtgtcttggttctactaatcaaaatcaagtcacagaaagccca |
38628149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 38746190 - 38746127
Alignment:
| Q |
63 |
taattaaaattatgg-gttagatatggtctttaatttttatgtcttggttctgctaataaaaat |
125 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||| ||| |||||||||||| ||||| ||||| |
|
|
| T |
38746190 |
taattaagattatggagttagatatggtctttaatctttgtgtcttggttctactaatcaaaat |
38746127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 54402134 - 54402087
Alignment:
| Q |
78 |
gttagatatggtctttaatttttatgtcttggttctgctaataaaaat |
125 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||| ||||| ||||| |
|
|
| T |
54402134 |
gttagatatggtctttaatctttgtgtcttggttctactaatcaaaat |
54402087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University