View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_low_31 (Length: 260)
Name: NF11389_low_31
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 4246952 - 4246717
Alignment:
| Q |
18 |
atgaaatgcccccaaatacagtttccaatatagttatttgctattggtggttttaaccttgtcctacaatctacagcaaacacaaaaccaaacttctctt |
117 |
Q |
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| T |
4246952 |
atgaaatgcccccaaatacagtttccaatatagttatttgctattggtggttttaaccttgtcctacaatctacagcaaacacaaaaccaaacttctctt |
4246853 |
T |
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| Q |
118 |
tataattttgaacttcgtggattgctttcgcaagacaaactagagaataagcacaagcgaggacaaacgatgatatattttgtggctttgattttcttgt |
217 |
Q |
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| T |
4246852 |
tataattttgaacttcgtggattgctttcgcaagacaaactagcgaataagcacaagcgaggacaaacgatgatatattttgtggctttgattctcttgt |
4246753 |
T |
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| Q |
218 |
atcgaatgtttcccatgatgataacaccctttgctt |
253 |
Q |
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| T |
4246752 |
atcgaatgtttcccatgttgataacaccctttgctt |
4246717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 253
Target Start/End: Complemental strand, 4251377 - 4251152
Alignment:
| Q |
28 |
cccaaatacagtttccaatatagttatttgctattggtggttttaaccttgtcctacaatctacagcaaacacaaaaccaaacttctctttataattttg |
127 |
Q |
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| T |
4251377 |
cccaaacacagtttccaagatagttatttggtattgttggttctaaccttgctctgcaatctacgctgaacacaaaagaaaacttctctttgtcattatg |
4251278 |
T |
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| Q |
128 |
aacttcgtggattgctttcgcaagacaaactagagaataagcacaagcgaggacaaacgatgatatattttgtggctttgattttcttgtatcgaatgtt |
227 |
Q |
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| T |
4251277 |
agccccatgaatcgcttttgcaacacaaacgagcgaataagcacaagtgatgacaaatgatgatagagtttgtggctttgattctttcgtatcgaatatt |
4251178 |
T |
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| Q |
228 |
tcccatgatgataacaccctttgctt |
253 |
Q |
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| T |
4251177 |
tcccatgtagataacactctttgctt |
4251152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 4192862 - 4192805
Alignment:
| Q |
21 |
aaatgcccccaaatacagtttccaatatagttatttgctattggtggttttaaccttg |
78 |
Q |
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| T |
4192862 |
aaatgcccccagacacagtttccaaaatagttatttggtattggtggttctaaccttg |
4192805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 205
Target Start/End: Complemental strand, 4234359 - 4234190
Alignment:
| Q |
36 |
cagtttccaatatagttatttgctattggtggttttaaccttgtcctacaatctacagcaaacacaaaaccaaacttctctttataattttgaacttcgt |
135 |
Q |
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| T |
4234359 |
cagtttccaaaatagttatttggtagtggtggctctaaccttgctctgcaatctacggtgaatgcaaacccaaacttctctttctccttttcaactccat |
4234260 |
T |
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| Q |
136 |
ggattgctttcgcaagacaaactagagaataagcacaagcgaggacaaacgatgatatattttgtggctt |
205 |
Q |
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| T |
4234259 |
gaattgcttttgccaaacaaacaagcgagtaagcacaagtgagaacaaaagatgataaagttggtggctt |
4234190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 4189737 - 4189672
Alignment:
| Q |
26 |
cccccaaatacagtttccaatatagttatttgctattggtggttttaaccttgtcctacaatctac |
91 |
Q |
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| T |
4189737 |
cccccaaacacagtttccaaaatagttacttggtattggtggttctaaccttgctctgcaatctac |
4189672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 4189611 - 4189555
Alignment:
| Q |
152 |
acaaactagagaataagcacaagcgaggacaaacgatgatatattttgtggctttga |
208 |
Q |
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| T |
4189611 |
acaaacgagtgaataagcacaagtgagaacaaaagatgataaagtttgtggctttga |
4189555 |
T |
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