View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_low_35 (Length: 239)
Name: NF11389_low_35
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 28606910 - 28606700
Alignment:
| Q |
1 |
ttgtcatgatgaagtaacatatctgtgattaacttaaaagaaagtaccagcaaatttaagcccgatggaactaattgttgtttacaaagctaattggcat |
100 |
Q |
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| T |
28606910 |
ttgtcatgatgaagtaacatatctgtgaataacttaaaagaaagtaccagcaaattta-------------taattgttgtttacaaagctaattggcat |
28606824 |
T |
|
| Q |
101 |
taacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattctctgataacaattgaacagcccttgagaattgttcattgaagta |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28606823 |
taacgtaacggcaatcctttctaatttcaccttgatctccaataagaggattattctctgataacaattgaacagcccttgagaattgttcattgaagta |
28606724 |
T |
|
| Q |
201 |
tccattatcagctgccatcttttt |
224 |
Q |
| |
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|||||||||||||||||| ||||| |
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| T |
28606723 |
tccattatcagctgccattttttt |
28606700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 90 - 224
Target Start/End: Complemental strand, 28636619 - 28636485
Alignment:
| Q |
90 |
ctaattggcattaacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattctctgataacaattgaacagcccttgagaattgt |
189 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28636619 |
ctaattggcattaacgtatcgacaatcctttctgatttcaccttgatctccaataagaggattattctctgataacaattgaacagcccttgagaattgt |
28636520 |
T |
|
| Q |
190 |
tcattgaagtatccattatcagctgccatcttttt |
224 |
Q |
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| T |
28636519 |
tcattgaagtatccattatcagctgccattttttt |
28636485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 90 - 224
Target Start/End: Complemental strand, 28664189 - 28664055
Alignment:
| Q |
90 |
ctaattggcattaacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattctctgataacaattgaacagcccttgagaattgt |
189 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28664189 |
ctaattggcattaacgtaacgacaatcctttcgaatttcaccttgatctccggtaagaggattattctccgataacaattgaacagcccttgagaattgt |
28664090 |
T |
|
| Q |
190 |
tcattgaagtatccattatcagctgccatcttttt |
224 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
28664089 |
tcattgaagtatccattatcagctgccattttttt |
28664055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 28657113 - 28656980
Alignment:
| Q |
90 |
ctaattggcattaacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattctctgataacaattgaacagcccttgagaattgt |
189 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28657113 |
ctaattggcattaacgaagcgacaatcctttctgatttcaccttgatctccaataagaggattattctctgataacaaaagaacagcccttgagaattgg |
28657014 |
T |
|
| Q |
190 |
tcattgaagtatccattatcagctgccatctttt |
223 |
Q |
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||||||||||| ||||||||| ||||||| |||| |
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| T |
28657013 |
tcattgaagtaaccattatcatctgccatttttt |
28656980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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