View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_low_39 (Length: 215)
Name: NF11389_low_39
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 41239025 - 41239227
Alignment:
| Q |
1 |
cctctattgtctccaaaatttctccaaaatttggcctattttcttgtgaacgtgacacacacataagagctatgttcaacaatgaaaatgcaccttgatg |
100 |
Q |
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| T |
41239025 |
cctctattgtctccaaaatttctccaaaatttggcctattttcttgtgaacgtgacacacacataagagctatgttcaacaatgaaaatgcaccttgatg |
41239124 |
T |
|
| Q |
101 |
atcattttccctaacttccttatcaaatacctctcctgtccattcctctctcaccattgacctcacccatctaacaagatctattctactaacttctctg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
41239125 |
atcattttccctaacttccttatcaaatacctctcctgtccattcctctctcaccattgacctcacccatctaacaaggtctattctactaacttctatg |
41239224 |
T |
|
| Q |
201 |
ctt |
203 |
Q |
| |
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||| |
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|
| T |
41239225 |
ctt |
41239227 |
T |
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