View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_low_4 (Length: 636)
Name: NF11389_low_4
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_low_4 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 14 - 487
Target Start/End: Original strand, 42519087 - 42519560
Alignment:
| Q |
14 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacagagt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42519087 |
cagagagcatggtaagacgtcttccaaagattctagttacagtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacagagt |
42519186 |
T |
|
| Q |
114 |
tagtgtctgactgtcgaatttgcagtattgattatctgcaggcttaatgtttagctgcttagcgtaaacatctggaaagaacttcattaagaatggatcc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42519187 |
tagtgtctgactgtcgaatttgcagtattgattatctgcaggcttaatgtttagctgcttagcataaacatctggaaagaacttcattaagaatggatcc |
42519286 |
T |
|
| Q |
214 |
attgccgtaactccacctatacattaattcattatcatgtcattaatcagaaaattattgtcacatgaacaattcttgagacatattttgtcaaacactt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42519287 |
attgccgtaactccacctatacattaattcattatcatgtcattaatcagaaaattattgtcacatgaacaattcttgagacatattttgtcaaacactt |
42519386 |
T |
|
| Q |
314 |
aaatggnnnnnnnnnnnnnnnnnnttagaatattgtacctgaaatgccaagatcataaccaaagattaagcctccacatgctgcagtcatgcaaatgatg |
413 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42519387 |
aaatggaaaaaagaagaaaataaattagaatattgtacctgaaatgccaagatcataaccaaagattaagcctccacatgctgcagtcatgcaaatgatg |
42519486 |
T |
|
| Q |
414 |
aacaccctaaaggtgaattttcctggatattcttttccagagccttgtgctacgtaacctccagccattgtgtt |
487 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42519487 |
aacaccctaatggtgaattttcctggatattcttttccagagccttgtgctatgtaacctccagccattgtgtt |
42519560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 492
Target Start/End: Original strand, 1240866 - 1241333
Alignment:
| Q |
14 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacagagt |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1240866 |
cagagagcatggtaagatgtcttccaaagattctagttgcggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgt |
1240965 |
T |
|
| Q |
114 |
tagtgtctgactgtcgaatttgcagtattgattatctgcaggcttaatgtttagctgcttagcgtaaacatctggaaagaacttcattaaga----atgg |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||| |||| |||| |
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| T |
1240966 |
tagtgtctgactgtcgaatttgcagtattgattatcggtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaagaatggatgg |
1241065 |
T |
|
| Q |
210 |
atccattgccgtaactccacctatacattaattcattatcatgtcattaatcagaaaattattgtcacatgaacaattcttgagacatattttgtcaaac |
309 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |
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| T |
1241066 |
atccattgccgtaactccacctatacattaattgtttatcatgtaattaatcagaaaattattgtcatatgaacaattcttgagacata-tttggcaaac |
1241164 |
T |
|
| Q |
310 |
acttaaatggnnnnnnnnnnnnnnnnnnttagaatattgtacctgaaatgccaagatcataaccaaagattaagcctccacatgctgcagtcatgcaaat |
409 |
Q |
| |
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|||||| ||| | |||||||||||||||||| |||||||||||| || |||||||||||| || |||||||| |||||||| |
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| T |
1241165 |
acttaattgg--------------aaaatgagaatattgtacctgaaaggccaagatcatagccgaagattaagccttcaaatgctgcaatcatgcaagc |
1241250 |
T |
|
| Q |
410 |
gatgaacaccctaaaggtgaattttcctggatattcttttccagagccttgtgctacgtaacctccagccattgtgttctttc |
492 |
Q |
| |
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|||||||||||||||||||| |||||| |||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
1241251 |
gatgaacaccctaaaggtgagttttcccggatattctttttcagagccatgtgctatgtaacctccagccattgtgttctttc |
1241333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 554 - 619
Target Start/End: Original strand, 42519628 - 42519693
Alignment:
| Q |
554 |
gtttagatatatgctgtcaggtatttttattatataaacagctaagtttttatttatcgacaaaat |
619 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42519628 |
gtttagatatatgctgtcaggtatttttattatataaacagctaagtttttatttatcgacaaaat |
42519693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 42550991 - 42550903
Alignment:
| Q |
21 |
catggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaaca |
109 |
Q |
| |
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|||||| ||||| |||||||| || |||||| |||||||| ||||| || || |||||||| ||||||||||||||||| ||||||| |
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| T |
42550991 |
catggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaaca |
42550903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 492
Target Start/End: Original strand, 41972499 - 41972962
Alignment:
| Q |
14 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacagagt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
41972499 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaatccacaagagcggccaaatacaaagaggatgtaaacaacgt |
41972598 |
T |
|
| Q |
114 |
tagtgtctgactgtcgaatttgcagtattgattatctgcaggcttaatgtttagctgcttagcgtaaacatctggaaagaacttcattaagaatggatcc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| |
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|
| T |
41972599 |
-agtgtctgactgtcgaatttgcagtattgattatccgtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaagaatggatcc |
41972697 |
T |
|
| Q |
214 |
attgccgtaactccacctatacattaattcattatcatgtcattaatcagaaaattattgtcacatgaacaattcttgagacatattttgtcaaacactt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41972698 |
attgccgtaactccacctatacattaattgtttatcatgtaattaatcagaaaattattgtcatatgaacaattcttgagacatattttgtcaaacactt |
41972797 |
T |
|
| Q |
314 |
aaatggnnnnnnnnnnnnnnnnnnttagaatattgtacctgaaatgccaagatcataaccaaagattaagcctccacatgctgcagtcatgcaaatgatg |
413 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| |||||||| |||| |
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|
| T |
41972798 |
caatgg--------------aaaatgagaatattgtacctgaaatgccaagatcatagccgaagattaagcctccaaatgctgcaatcatgcaagcgatg |
41972883 |
T |
|
| Q |
414 |
aacaccctaaaggtgaattttcctggatattcttttccagagccttgtgctacgtaacctccagccattgtgttctttc |
492 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||| ||||||| ||||||| ||||||||||||||||||||| |||| |
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|
| T |
41972884 |
aacaccctaaaggtgagttttcccggatattctttttcagagccatgtgctatgtaacctccagccattgtgttgtttc |
41972962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 153; Significance: 9e-81; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 209 - 492
Target Start/End: Original strand, 1 - 270
Alignment:
| Q |
209 |
gatccattgccgtaactccacctatacattaattcattatcatgtcattaatcagaaaattattgtcacatgaacaattcttgagacatattttgtcaaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
1 |
gatccattgccgtaactccacctatacattaattgtttatcatgtaattaatcagaaaattattgtcatatgaacaattcttgagacatattttgtcaaa |
100 |
T |
|
| Q |
309 |
cacttaaatggnnnnnnnnnnnnnnnnnnttagaatattgtacctgaaatgccaagatcataaccaaagattaagcctccacatgctgcagtcatgcaaa |
408 |
Q |
| |
|
||||| ||||| | ||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| |||||||| |
|
|
| T |
101 |
cacttcaatggaaaa--------------tgagaatattgtacctgaaatgccaagatcatagccgaagattaagcctccaaatgctgcaatcatgcaag |
186 |
T |
|
| Q |
409 |
tgatgaacaccctaaaggtgaattttcctggatattcttttccagagccttgtgctacgtaacctccagccattgtgttctttc |
492 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||| ||||||| ||||||| ||||||||||||||||||||| |||| |
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|
| T |
187 |
cgatgaacaccctaaaggtgagttttcccggatattctttttcagagccatgtgctatgtaacctccagccattgtgttgtttc |
270 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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