View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11389_low_6 (Length: 559)
Name: NF11389_low_6
Description: NF11389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11389_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 21 - 544
Target Start/End: Complemental strand, 14672696 - 14672173
Alignment:
| Q |
21 |
atagtattgtgcttctcaataacttcactttcacgaactataatagctctcatttgatgaaggagtattcaatcaacattacatcagacaagttatcact |
120 |
Q |
| |
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||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14672696 |
atagtatcgtgcttctcaataatttcaatttcacgaactataatagctctcatttgatgaaggagtagtcaatcaacattacatcagacaagttatcact |
14672597 |
T |
|
| Q |
121 |
tactttcgtccctcaaaacaattcactcggctttattaatgccatcgaagttatctctataccagatgacctcttccctgaccaaatagtagtaactcta |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14672596 |
tactttcgtccctcaaaacaattcactcggctttattaatgccatcgaagttatctctataccagatgacctcttccctgaccaaatagtagtaactcta |
14672497 |
T |
|
| Q |
221 |
aatccatcaggcttttttgaacatttctcaaaatctatcgttgaaacggtgtacagagtcagtattggtggtgcatctttgagtgacaaccttggaagga |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14672496 |
aatccatcaggcttttttgaacatttctcaaaatctatcgttgaaacggtgtccagagtcagtattggtggtgcatctttgagtgacaaccttggaagga |
14672397 |
T |
|
| Q |
321 |
cttgggagaatgacggatattacttctaccaccccataaacagctccactagttctgatcttgttgtttctactaaccctgctacaataaagtactctat |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14672396 |
cttgggagaatgacggatattacttctaccaccccataaacagctccactagttctgatcttgttgtttctactaaccctgctacaataaagtactctat |
14672297 |
T |
|
| Q |
421 |
tgttgctccaccattggtttatgctacagccagaaccttcaaagttgcatcacagtcacagcgatccgatttaagttggcacttcattgtagatccgaac |
520 |
Q |
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| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14672296 |
ttttggtccaccattggtttatgctacagccagaaccttcaaaattgcatcacagtcacagcgatccgatttaagttggcacttcattgtagatccgaac |
14672197 |
T |
|
| Q |
521 |
ttcatgtattttgttcgggttcat |
544 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
14672196 |
ttcatgtattttgttcgggttcat |
14672173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 21 - 544
Target Start/End: Complemental strand, 14678074 - 14677551
Alignment:
| Q |
21 |
atagtattgtgcttctcaataacttcactttcacgaactataatagctctcatttgatgaaggagtattcaatcaacattacatcagacaagttatcact |
120 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
14678074 |
atagtatcgtgcttctcaataatttcaatttcacgaactataatagctctcatttgatgaaggagtagtcaatcaacattacatcagacaagttatcact |
14677975 |
T |
|
| Q |
121 |
tactttcgtccctcaaaacaattcactcggctttattaatgccatcgaagttatctctataccagatgacctcttccctgaccaaatagtagtaactcta |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14677974 |
tactttcgtccctcaaaacaattcactcggctttattaatgccatcgaagttatctctataccagatgacctcttccctgaccaaatagtagtaactcta |
14677875 |
T |
|
| Q |
221 |
aatccatcaggcttttttgaacatttctcaaaatctatcgttgaaacggtgtacagagtcagtattggtggtgcatctttgagtgacaaccttggaagga |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14677874 |
aatccatcaggcttttttgaacatttctcaaaatctatcgttgaaacggtgtccagagtcagtattggtggtgcatctttgagtgacaaccttggaagga |
14677775 |
T |
|
| Q |
321 |
cttgggagaatgacggatattacttctaccaccccataaacagctccactagttctgatcttgttgtttctactaaccctgctacaataaagtactctat |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14677774 |
cttgggagaatgacggatattacttctaccaccccataaacagctccactagttctgatcttgttgtttctactaaccctgctacaataaagtactctat |
14677675 |
T |
|
| Q |
421 |
tgttgctccaccattggtttatgctacagccagaaccttcaaagttgcatcacagtcacagcgatccgatttaagttggcacttcattgtagatccgaac |
520 |
Q |
| |
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| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14677674 |
ttttggtccaccattggtttatgctacagccagaaccttcaaaattgcatcacagtcacagcgatccgatttaagttggcacttcattgtagatccgaac |
14677575 |
T |
|
| Q |
521 |
ttcatgtattttgttcgggttcat |
544 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
14677574 |
ttcatgtattttgttcgggttcat |
14677551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 14687401 - 14687333
Alignment:
| Q |
29 |
gtgcttctcaataacttcactttcacgaactataatagctctcatttgatgaaggagtattcaatcaac |
97 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||| ||| |||| |
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|
| T |
14687401 |
gtgcttctcaataacatcactttcatgaactatatcagctctcatttgatgaaggagtatgcaaccaac |
14687333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 14666262 - 14666309
Alignment:
| Q |
32 |
cttctcaataacttcactttcacgaactataatagctctcatttgatg |
79 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
14666262 |
cttctcaataacatcactttcatgaactatattagctctcttttgatg |
14666309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 30734901 - 30734834
Alignment:
| Q |
29 |
gtgcttctcaataacttcactttcacgaactataatagctctcatttgatgaaggagtattcaatcaa |
96 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| |||||||| |||||||||||||||| ||||||| |
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|
| T |
30734901 |
gtgcttctcaataacatcactttcatgaactatattagctctcttttgatgaaggagtatgcaatcaa |
30734834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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